Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0358.Seq
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81132-8|CAB03429.1|   90|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z81132-7|CAB03428.1|   86|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical ...    27   7.3  
Z81055-4|CAB02893.1|  824|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z81132-8|CAB03429.1|   90|Caenorhabditis elegans Hypothetical
           protein T26E4.10 protein.
          Length = 90

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
 Frame = +2

Query: 203 VRATSTYII**NKQNGVRIFLDFIT*KIKLGSVLSTACRRGCRTTAGSCYGRTX------ 364
           +  T + ++  N++  +    D +  +  LG ++    + GC      C G T       
Sbjct: 17  ISTTFSNVVQGNEETALDSTYDMVPGEGVLGQLIRAKRQWGCGCDCWGCCGPTPDPAATP 76

Query: 365 --ASCRCCGCSW 394
              +C CCGC W
Sbjct: 77  APCNCGCCGCGW 88


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = +2

Query: 314 CRRGCRTTAGSCYGRTXASCR--CCGC 388
           CRR C      C  R    CR  CCGC
Sbjct: 97  CRRCCTCCRTCCCTRCCTCCRPCCCGC 123


>Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical
           protein T01B7.8 protein.
          Length = 164

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = +2

Query: 314 CRRGCRTTAGSCYGRTXASCR--CCGC 388
           CRR C      C  R    CR  CCGC
Sbjct: 95  CRRCCTCCRTCCCTRCCTCCRPCCCGC 121


>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = +2

Query: 314 CRRGCRTTAGSCYGRTXASCR--CCGC 388
           CRR C      C  R    CR  CCGC
Sbjct: 96  CRRCCTCCRTCCCTRCCTCCRPCCCGC 122


>U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical
           protein C04G6.10 protein.
          Length = 166

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = +2

Query: 314 CRRGCRTTAGSCYGRTXASCR--CCGC 388
           CRR C      C  R    CR  CCGC
Sbjct: 96  CRRCCTCCRTCCCTRCCTCCRPCCCGC 122


>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = +2

Query: 314 CRRGCRTTAGSCYGRTXASCR--CCGC 388
           CRR C      C  R    CR  CCGC
Sbjct: 97  CRRCCTCCRTCCCTRCCTCCRPCCCGC 123


>Z81132-7|CAB03428.1|   86|Caenorhabditis elegans Hypothetical
           protein T26E4.9 protein.
          Length = 86

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
 Frame = +2

Query: 290 LGSVLSTACRRGCRTTAGSCYGRTX--------ASCRCCGCSW 394
           LG ++    + GC      C G T          +C CCGC W
Sbjct: 42  LGQLIRAKRQWGCGCDCWGCCGPTPDPAATPAPCNCGCCGCGW 84


>AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical
           protein C26G2.1 protein.
          Length = 1270

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 199 ICSCNIDVYNLMK*AKRCTYFFRF 270
           +C C + + N  + +K   YFFRF
Sbjct: 496 LCLCEVVIMNFFRFSKNVFYFFRF 519


>Z81055-4|CAB02893.1|  824|Caenorhabditis elegans Hypothetical
           protein F01G10.5 protein.
          Length = 824

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +1

Query: 103 LTLQVYTVQMALFNQI*KHREKLNDIVLNLN*ICSCNIDVYNLMK 237
           LT+QV  +Q A  N++   R+K  +++  L    + N+D+  L+K
Sbjct: 330 LTMQVKDLQDASENELASFRQKEKELIDELRMATNENVDLEELLK 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,198,452
Number of Sequences: 27780
Number of extensions: 139714
Number of successful extensions: 355
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)