Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0358.Seq
         (489 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   5.3  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   9.3  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   9.3  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   9.3  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   9.3  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   9.3  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 163  PYAFIFD*TKPFERYTL 113
            PYA + D  KP  RYT+
Sbjct: 964  PYAALIDELKPATRYTI 980


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 163  PYAFIFD*TKPFERYTL 113
            PYA + D  KP  RYT+
Sbjct: 960  PYAALIDELKPATRYTI 976


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +3

Query: 54  FFYWKVKYXIKTKTRVVN 107
           FFYW++     + T+ +N
Sbjct: 265 FFYWRIYNAAVSTTKAIN 282


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 110 NVNYPCFCFNXVFYFPIKKCVAVICGSFNKR 18
           N NY   C+N  +   I   V V  G+F  R
Sbjct: 96  NNNYKQLCYNINYIEQIPVPVPVYYGNFPPR 126


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 110 NVNYPCFCFNXVFYFPIKKCVAVICGSFNKR 18
           N NY   C+N  +   I   V V  G+F  R
Sbjct: 96  NNNYKQLCYNINYIEQIPVPVPVYYGNFPPR 126


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 110 NVNYPCFCFNXVFYFPIKKCVAVICGSFNKR 18
           N NY   C+N  +   I   V V  G+F  R
Sbjct: 96  NNNYKQLCYNINYIEQIPVPVPVYYGNFPPR 126


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 110 NVNYPCFCFNXVFYFPIKKCVAVICGSFNKR 18
           N NY   C+N  +   I   V V  G+F  R
Sbjct: 96  NNNYKQLCYNINYIEQIPVPVPVYYGNFPPR 126


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 110 NVNYPCFCFNXVFYFPIKKCVAVICGSFNKR 18
           N NY   C+N  +   I   V V  G+F  R
Sbjct: 96  NNNYKQLCYNINYIEQIPVPVPVYYGNFPPR 126


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 253 YTVLLISLNYIRRCCTNKSSLN 188
           Y + ++ LN+ ++  T  SS+N
Sbjct: 213 YNLTMVKLNWPKKRVTKMSSIN 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,094
Number of Sequences: 438
Number of extensions: 1554
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)