Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0357.Seq
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    68   5e-13
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    27   0.83 
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   1.5  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   3.4  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    24   5.9  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    24   5.9  

>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 67.7 bits (158), Expect = 5e-13
 Identities = 40/111 (36%), Positives = 65/111 (58%), Gaps = 3/111 (2%)
 Frame = +3

Query: 9   ELETMRSSITSQAREHVRADEVLLTFGASALVERFLR-PTQNRNCKVVVAEGTDVGE--S 179
           EL+ + + I  Q+ +H+ ++E++LT G S  VE FLR   + R   V+VAEG    +  S
Sbjct: 183 ELDKINTDIEVQSMDHLHSNEIILTQGCSKTVEAFLRFAAKKRKFSVIVAEGFPNNQKGS 242

Query: 180 HAMARRLSNSGVSVTVINSSCVFAVCPXSXRWWXRCMLRXGXCAVLGDSGL 332
           HAMA+RL+ +G+  TVI+ + +FA+     +      +  G  A+LG+ GL
Sbjct: 243 HAMAKRLAQAGIDTTVISDATIFAIMSRVNK------VILGTHAILGNGGL 287


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 0.83
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 73  CYSRSGPALWSSGS*GRPRIGTARSSSRKGLTSARVTP 186
           C+     ++WS GS     + T +SSS KG+T   V P
Sbjct: 95  CHDNGQISMWSKGS--WLLVHTLKSSSHKGITGIAVHP 130


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = +3

Query: 246 FAVCPXSXRWWXRCMLRXGXCAV 314
           F +C  +  WW R  +  G C +
Sbjct: 545 FQLCSENYNWWWRSFITPGFCGI 567


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 149 DDLAVPILGRPQEPLDQSAGPERE*HLVRPHVLPGLTR 36
           DD+ V + G   EP+++   P    HL++   L G T+
Sbjct: 154 DDIPVEVSGGDIEPVNEFTSPPLNSHLLQNIKLSGYTQ 191


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 175 SPTSVPSATTTLQFLFWVGLRNRST 101
           S + + +A   L  LFW+G+R++ T
Sbjct: 285 SASFMENAKVALTTLFWIGVRSQQT 309


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 265 DXGHTANTHELLMTVTETPELLSRRAMA*LSPTSVPSAT 149
           D   T NTHE    +  +PE     A A   P+S+PS +
Sbjct: 214 DRSQTKNTHEETSPIVSSPE---DDADAAFKPSSLPSTS 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,134,755
Number of Sequences: 5004
Number of extensions: 16752
Number of successful extensions: 41
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)