Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0357.Seq
(348 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0069 - 12576197-12576290,12576658-12576851,12577671-125777... 63 5e-11
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124... 40 7e-04
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 38 0.002
07_03_1502 + 27010328-27010509,27010715-27010973,27011989-270129... 29 1.0
07_01_0080 + 587674-588510 27 3.1
07_03_1156 - 24416835-24417461 27 4.0
08_02_1543 + 27783063-27783182,27784321-27784485,27784577-277846... 27 5.3
06_03_0508 - 21607706-21608863,21608943-21609090,21609411-216095... 27 5.3
06_03_0947 + 26248378-26248494,26248600-26248764,26248843-262489... 26 7.1
01_05_0163 - 18773962-18774297 26 7.1
09_06_0252 + 21867179-21867283,21868362-21868526,21868621-218687... 26 9.3
05_04_0431 + 21175357-21175655,21175716-21175851,21175859-21176155 26 9.3
02_05_1295 + 35531565-35531834 26 9.3
>10_07_0069 -
12576197-12576290,12576658-12576851,12577671-12577796,
12577879-12577981,12578085-12578192,12579343-12579472,
12579685-12579966,12581046-12581200,12581306-12581358
Length = 414
Score = 63.3 bits (147), Expect = 5e-11
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Frame = +3
Query: 9 ELETMRSSITSQAREHVRADEVLLTFGASALVERFLRPTQN--RNCKVVVAEGTDVGESH 182
E++T I+ QA EH+ +EV+LT G S V+ FL + R+ +V VAEG + H
Sbjct: 188 EIDTCYDQISEQAVEHIHQNEVILTLGRSRTVKEFLYAAKEKKRSFRVFVAEGAPRYKGH 247
Query: 183 AMARRLSNSGVSVTVINSSCVFAV 254
+A+ L GV TVI S VFA+
Sbjct: 248 VLAKELVEKGVQTTVITDSAVFAM 271
>03_05_0478 -
24712157-24712177,24712206-24712260,24712377-24712473,
24712558-24713302,24713822-24714189,24714279-24714419,
24715480-24715849
Length = 598
Score = 39.5 bits (88), Expect = 7e-04
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 33 ITSQAREHVRADEVLLTFGASALVERFLRPTQ--NRNCKVVVAEGTDVGESHAMARRLSN 206
I S A VR ++VLLT+G+S++VE L R +V+V + E + RRL
Sbjct: 403 IVSHAITKVRDNDVLLTYGSSSVVEMILDHAHELGRKFRVIVVDSRPKLEGQGLLRRLVE 462
Query: 207 SGVSVTVINSSCV 245
G++ T + + +
Sbjct: 463 KGINCTYTHINAI 475
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 37.9 bits (84), Expect = 0.002
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +3
Query: 33 ITSQAREHVRADEVLLTFGASALVERFLRPTQ--NRNCKVVVAEGTDVGESHAMARRLSN 206
I S A VR D+VLLT+ +S++VE + +VVV + E A+ RL
Sbjct: 398 IVSHAIAKVRDDDVLLTYASSSVVEMIFDHANELGKKFRVVVVDSRPNNEGQALLHRLVA 457
Query: 207 SGVSVTVINSSCV 245
G+S T + + +
Sbjct: 458 KGISCTYTHINAI 470
>07_03_1502 +
27010328-27010509,27010715-27010973,27011989-27012975,
27013388-27013822
Length = 620
Score = 29.1 bits (62), Expect = 1.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 196 RRAMA*LSPTSVPSATTTLQFLFWVGLRNRSTRALAPNV 80
R A++ LSP V + TT +Q L W + R LA +
Sbjct: 135 RNAISLLSPLVVMTVTTLIQMLGWTNQEDNQIRLLAAKI 173
>07_01_0080 + 587674-588510
Length = 278
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 344 GNGMXARVPKDRAXPXSQHAPXPPPX*P 261
G+GM R P P S +P PPP P
Sbjct: 84 GDGMFRRPPPPPPPPPSSGSPPPPPPPP 111
>07_03_1156 - 24416835-24417461
Length = 208
Score = 27.1 bits (57), Expect = 4.0
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 140 AVPILGRPQEPLDQSAGPERE*HLVRPH-VLPGLTRYGRPH 21
AVP L +P+ P A PE H PH V+P L + PH
Sbjct: 67 AVPELPKPELPPPHPAVPELPKHEEPPHPVVPELPKPEVPH 107
>08_02_1543 +
27783063-27783182,27784321-27784485,27784577-27784686,
27784771-27784876,27784952-27785050,27785450-27786607
Length = 585
Score = 26.6 bits (56), Expect = 5.3
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +3
Query: 240 CVFAVCPXSXRWWXRCMLRXGXCAV 314
C F +C WW R L G A+
Sbjct: 499 CYFQLCSEDYMWWWRSYLTSGSSAI 523
>06_03_0508 -
21607706-21608863,21608943-21609090,21609411-21609523,
21609612-21609705,21609841-21609950,21610093-21610257,
21611660-21611800
Length = 642
Score = 26.6 bits (56), Expect = 5.3
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +3
Query: 240 CVFAVCPXSXRWWXRCMLRXGXCAV 314
C F +C WW R L G A+
Sbjct: 556 CYFQLCSEDYHWWWRAYLTAGSSAL 580
>06_03_0947 +
26248378-26248494,26248600-26248764,26248843-26248952,
26249065-26249179,26249310-26249408,26249485-26249694,
26249802-26250965
Length = 659
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +3
Query: 240 CVFAVCPXSXRWWXRCMLRXGXCAV 314
C F +C WW R L G A+
Sbjct: 573 CYFQLCSEDYEWWWRSYLTAGSSAL 597
>01_05_0163 - 18773962-18774297
Length = 111
Score = 26.2 bits (55), Expect = 7.1
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Frame = +3
Query: 159 GTDVGESHAMA--RRLSNSGVSVTVINSSCVFAVCPXSXRWWXRCMLR--XGXCAVLG 320
G DVG S + R + + G + T + ++ + WW RC R G CA G
Sbjct: 41 GGDVGRSRNCSWHRLVRDRGAAATTMTAAADGGADDDNRVWWPRCRRRHTRGRCARRG 98
>09_06_0252 +
21867179-21867283,21868362-21868526,21868621-21868730,
21868802-21868904,21868998-21869110,21869204-21869357,
21869476-21870633
Length = 635
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +3
Query: 240 CVFAVCPXSXRWWXRCMLRXGXCAV 314
C F +C WW R L G A+
Sbjct: 549 CYFQLCSEDYMWWWRSYLTSGSSAL 573
>05_04_0431 + 21175357-21175655,21175716-21175851,21175859-21176155
Length = 243
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 85 SGPALWSS--GS*GRPRIGTARSSSRKGLTSARVT 183
SG W S G GRPR+ + RKG + RVT
Sbjct: 70 SGRGGWGSSGGGWGRPRLWFSARRRRKGTMTIRVT 104
>02_05_1295 + 35531565-35531834
Length = 89
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 114 LRPTQNRNCKVVVAEGTDVGESHAMARRLSNSG 212
+ P+Q + VV G+ G+ +A++RR+ G
Sbjct: 51 MAPSQEKEAGVVAGAGSICGQKYAVSRRMVPQG 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,596,075
Number of Sequences: 37544
Number of extensions: 150675
Number of successful extensions: 515
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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