Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0357.Seq
         (348 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27994| Best HMM Match : IF-2B (HMM E-Value=5.5e-23)                 64   2e-11
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   0.78 
SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6)               28   1.8  
SB_54638| Best HMM Match : Cache (HMM E-Value=0.0031)                  27   4.2  
SB_49774| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_27525| Best HMM Match : PAS (HMM E-Value=0.99)                      26   7.3  
SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)                  26   9.7  
SB_18665| Best HMM Match : F5_F8_type_C (HMM E-Value=2.2e-17)          26   9.7  

>SB_27994| Best HMM Match : IF-2B (HMM E-Value=5.5e-23)
          Length = 296

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
 Frame = +3

Query: 9   ELETMRSSITSQAREHVRADEVLLTFGASALVERFLR-PTQNRNCKVVVAEGTDVGESHA 185
           ELE+   +I +QA EH+ ++EV++T G S  VE FL+   + R   V+V EG    +   
Sbjct: 129 ELESSADNIATQALEHIHSNEVIMTAGKSRTVETFLKNAARKRKFSVIVVEGAPFYQGQE 188

Query: 186 MARRLSNSGVSVTVINSSCVFAVCPXSXRWWXRCMLRXGXCAVLGDSGLHSV 341
           +A+ L+  G+  T+I  S VFA+     +      +  G   V+ D GL +V
Sbjct: 189 LAKSLAKVGIETTIITDSAVFAIMSRVNK------VIIGTHVVMADGGLRAV 234


>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2409

 Score = 29.5 bits (63), Expect = 0.78
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 76   YSRSGPALWSSGS*GRPRIGTARSSSRKGLTSARVTP 186
            ++R GP     GS G P +G++R +S  GL +   +P
Sbjct: 2005 FTRRGPGSEGGGSTGTPSVGSSRMASDMGLPNISRSP 2041


>SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6)
          Length = 697

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 253 TANTHELLMTVTETPELLSRRAMA*LSPTSVP 158
           TA  H +L T TET E L +RAM    P ++P
Sbjct: 621 TARVHTILSTDTETREALRQRAM---DPKNIP 649


>SB_54638| Best HMM Match : Cache (HMM E-Value=0.0031)
          Length = 598

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 57  VRADEVLLTFGASALVERFLRPTQNRNCKVVVAEGTD 167
           V  D + L    +  +  F RPT N+NC   + + TD
Sbjct: 151 VYLDAIGLGMVVTGTLPVFYRPTVNKNCSTALKQSTD 187


>SB_49774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 129 NRNCKVVVAEGTDVGESHAMARRLSNSGVSVTVI 230
           + N  +V+ +GT V +  A A+ L  SGV V  +
Sbjct: 422 DNNVLIVLTDGTSVDDVKAPAKALRESGVEVFAV 455


>SB_27525| Best HMM Match : PAS (HMM E-Value=0.99)
          Length = 448

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 295 RSMHLXHHLXDXGHTANTHELLMT 224
           +S +  HH  D  +  NTH++L+T
Sbjct: 73  KSWYSFHHAADLDNVLNTHKMLLT 96


>SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)
          Length = 798

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 3   RTELETMRSSITSQAREHVRADEVLLTFGASALVERFLRPTQNRNCKVVV 152
           RT   + ++S+   A EH++ +E          VE+ LR   + N KV++
Sbjct: 674 RTPTVSRKTSMKLTAEEHLQLEEERKKMWKKEQVEQKLRARLDSNSKVII 723


>SB_18665| Best HMM Match : F5_F8_type_C (HMM E-Value=2.2e-17)
          Length = 269

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
 Frame = +1

Query: 4   VPSWXXXXXXXXXXXXSTCGRTRCYSRSGPALWSSGS----------*GRPRIGTARSSS 153
           +PSW             T GR       G   W+SGS           GRPR  TA ++ 
Sbjct: 6   IPSWAITASSSYYDHPPTYGRLYLSIADGSTCWASGSGDTAPFFQVNLGRPRYVTAIATQ 65

Query: 154 RKGLTSARVTPWH 192
           R+     RVT ++
Sbjct: 66  RRYGWGQRVTAYN 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,267,453
Number of Sequences: 59808
Number of extensions: 146179
Number of successful extensions: 310
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)