Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0357.Seq
         (348 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97194-5|AAB52448.1|  442|Caenorhabditis elegans Hypothetical pr...    31   0.23 
U41558-5|AAK39247.1|  143|Caenorhabditis elegans Hypothetical pr...    27   3.7  
L16622-6|AAA27913.2|  408|Caenorhabditis elegans Hypothetical pr...    27   3.7  
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr...    27   4.9  
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr...    27   4.9  
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr...    27   4.9  
Z74474-2|CAA98955.1|  425|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>U97194-5|AAB52448.1|  442|Caenorhabditis elegans Hypothetical
           protein C37A2.3 protein.
          Length = 442

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = +3

Query: 75  LLTFGASALVERFLRP--TQNRNCKVVVAE---GTDVGESHAMARR 197
           L  FG+ AL ERFLRP  T +    + V+E   G+DV   H  ARR
Sbjct: 154 LAQFGSDALRERFLRPSITGDLVSSLAVSEPHAGSDVSAVHTHARR 199


>U41558-5|AAK39247.1|  143|Caenorhabditis elegans Hypothetical
           protein K02B2.6 protein.
          Length = 143

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 217 ETPELLSRRAMA*LSPTSVPSATTTLQFLFWVGLRNRSTR 98
           +T ++   R    L  +S+P  T+T+ FL  + L+NRS R
Sbjct: 59  KTTQVERTRCANALKSSSMPRGTSTMSFLDPIQLKNRSGR 98


>L16622-6|AAA27913.2|  408|Caenorhabditis elegans Hypothetical
           protein C02D5.1 protein.
          Length = 408

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +3

Query: 75  LLTFGASALVERFLRPTQNRN--CKVVVAE---GTDVGESHAMARR 197
           L  FG+ +L  RFLRP+ N +    + V+E   G+DV      ARR
Sbjct: 120 LAQFGSDSLRNRFLRPSINGDLVSSIAVSEPHAGSDVSAIRTHARR 165


>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like
           protein protein 4,isoform c protein.
          Length = 1576

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 3   RTELETMRSSITSQAREHVRADEV 74
           R E+ET+R  IT   +EH   +E+
Sbjct: 400 REEVETLRMQITQTKKEHAETEEL 423


>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like
           protein protein 4,isoform b protein.
          Length = 1610

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 3   RTELETMRSSITSQAREHVRADEV 74
           R E+ET+R  IT   +EH   +E+
Sbjct: 400 REEVETLRMQITQTKKEHAETEEL 423


>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like
           protein protein 4,isoform a protein.
          Length = 1595

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 3   RTELETMRSSITSQAREHVRADEV 74
           R E+ET+R  IT   +EH   +E+
Sbjct: 400 REEVETLRMQITQTKKEHAETEEL 423


>Z74474-2|CAA98955.1|  425|Caenorhabditis elegans Hypothetical
           protein K10C8.2 protein.
          Length = 425

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 144 VVVAEGTDVGESHA-MARRLSNSGVSVTVINSSCVFAVCPXSXRWW 278
           ++V+    +G  H  + RR+SNS     VI ++ VFA    + RW+
Sbjct: 118 ILVSVHRYLGVCHPFLIRRISNSNAVKAVIVAAIVFAFVFNASRWF 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,558,266
Number of Sequences: 27780
Number of extensions: 106065
Number of successful extensions: 267
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)