Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0357.Seq
         (348 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   1.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   1.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   1.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   5.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   5.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   7.3  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 44  LTRYGRPHCLQ 12
           + RYG+PHC +
Sbjct: 588 VVRYGKPHCAE 598


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 44  LTRYGRPHCLQ 12
           + RYG+PHC +
Sbjct: 626 VVRYGKPHCAE 636


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 142 RSSSRKGLTSARVTPWH 192
           RSSS KG+T      WH
Sbjct: 601 RSSSTKGITIQEPPQWH 617


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 108 RFLRPTQNRNCKVVVAEG 161
           R +RP  N N  VVV  G
Sbjct: 34  RLIRPVSNNNDTVVVKLG 51


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 339 RNXGPSPQGPR 307
           RN GP  +GPR
Sbjct: 56  RNPGPGSKGPR 66


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -2

Query: 194 PCHGVTLADVSPFRDDDLAVPI 129
           P + +T A   PF    + VP+
Sbjct: 211 PAYNMTFAQNGPFNTTTIFVPV 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,551
Number of Sequences: 438
Number of extensions: 1773
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)