Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0356.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.37 
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    24   1.1  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    24   1.1  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    24   1.1  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   2.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.4  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 148 NLKHYKEYSKSCLVVLNTDILTEMVRNI--EYVFEAKAIFP 264
           N+K  K   + C + +N   L E  RN+  + +F  +A FP
Sbjct: 718 NMKLEKVPGECCAICVNATSLVESNRNVPQKCIFNGQAYFP 758


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 284 LLHKPGQGKIAFASKTYSIFLTISVRISVFNTTKHDLEYSL 162
           LL K G    A    TYS+F+  ++ ++V+  T   +++ +
Sbjct: 237 LLQKMGNA-YARTYSTYSLFMMANITVAVYGFTSEIVDHGI 276


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 284 LLHKPGQGKIAFASKTYSIFLTISVRISVFNTTKHDLEYSL 162
           LL K G    A    TYS+F+  ++ ++V+  T   +++ +
Sbjct: 237 LLQKMGNA-YARTYSTYSLFMMANITVAVYGFTSEIVDHGI 276


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 284 LLHKPGQGKIAFASKTYSIFLTISVRISVFNTTKHDLEYSL 162
           LL K G    A    TYS+F+  ++ ++V+  T   +++ +
Sbjct: 237 LLQKMGNA-YARTYSTYSLFMMANITVAVYGFTSEIVDHGI 276


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 13  VYYLGNTITFFFFPV 57
           V++LG+ + FF FP+
Sbjct: 236 VFFLGSILIFFIFPL 250


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -1

Query: 475  LPDSHPQPIRRAPTVPAAPIPPQARPG 395
            +PD+  +     P  P  P PPQ   G
Sbjct: 994  IPDNPSREDCTKPPEPVTPAPPQVTTG 1020


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,072
Number of Sequences: 336
Number of extensions: 2925
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)