Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0356.Seq
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 29 0.39
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 29 0.52
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 27 1.6
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 26 3.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 3.6
SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51... 26 3.6
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 3.6
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 4.8
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 26 4.8
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 25 8.4
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 25 8.4
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 8.4
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 8.4
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 29.5 bits (63), Expect = 0.39
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 508 IEGNQDPVTKALPDSHPQPIRRAPTVPAAP 419
IEG+ D V K LP P +AP P AP
Sbjct: 367 IEGDDDEVAKVLPKPPSVPTIQAPIPPEAP 396
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 29.1 bits (62), Expect = 0.52
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Frame = -1
Query: 490 PVTKALPDSHPQP-------IRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 332
PV P H P + AP PAAP+ P+A P Q ++P A+ V + P
Sbjct: 521 PVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEA-PSVPQRPAVPVVPEALSVPQ--P 577
Query: 331 PLRLVFPGV 305
P+ V P V
Sbjct: 578 PVAPVAPEV 586
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 317 VSRSHHSGVNRLLHKPGQGKIAFASKTYSIFL 222
V + H G+N L PG IA ASK I L
Sbjct: 333 VLKYHSDGINSLAFHPGSNVIALASKDTRISL 364
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 205 YRCLIQLNTTWSIPCSV*DFKSYLMTSNDFNDNF 104
+RC T SIPC++ + ND+N NF
Sbjct: 85 FRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNF 118
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 3.6
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = -1
Query: 490 PVTKALP-DSHPQPI-RRAPTVPA-APIPPQARPGQAQPLQAVLL-PRAVQVHRTLPPL 326
P T A P S P P AP +P+ AP P + P AQP V P A + +PP+
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPM 197
>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
L51|Schizosaccharomyces pombe|chr 2|||Manual
Length = 145
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 438 RQCQQHRFHLKHVRGKHNHFRQFFYLGRFKYI 343
++ Q FH+ + +GKH R ++ GR K I
Sbjct: 53 KESQDVEFHVTNRQGKHPLIRAYYNTGREKVI 84
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 493 DPVTKALPDSHPQPIRRAPTVPAAPIPPQAR 401
D V K PD P+ R PT+P I +R
Sbjct: 376 DGVPKPTPDGFPRRFERDPTIPPDSIKVYSR 406
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 457 QPIRRAPTVPAAPIPPQARPGQ 392
+P+ R P +P P+P + PG+
Sbjct: 101 EPLPREPPLPNEPVPEEPLPGE 122
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 490 PVTKALPDS--HPQPIRRAPTVPAAPIPPQARPGQAQP 383
P ++ P + P P+ + V P PP A PG++ P
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -1
Query: 490 PVTKALPDSHPQPIRRAPTVPAAPIPPQA-RPGQAQPLQAV 371
P+ LP P P PAAP PP A P A P+ ++
Sbjct: 454 PIAPPLPAGMPAA---PPLPPAAPAPPPAPAPAPAAPVASI 491
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 466 SHPQPIRRAPTVPAAPIPPQARPGQA 389
S+P ++R P +PA P+ P RP A
Sbjct: 221 SYPYELQRKPLIPAHPV-PSFRPTSA 245
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -1
Query: 511 WIEGNQDPVTKALPDSHPQPIRRAPTVPAAPIPP 410
W E QD + A P P R A +VP P PP
Sbjct: 149 WRE-TQDKMASATPIYKPNQRRIAASVPDKPPPP 181
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 8.4
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -1
Query: 454 PIRRAPTV-PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 320
P RR V PAAP+P A P + P A P+ + P L L
Sbjct: 316 PKRRPIEVKPAAPVPTPAPPVKTSPHPASYRPQPTRNVEVRPLLML 361
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.0 bits (52), Expect = 8.4
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%)
Frame = -1
Query: 466 SHP---QPIRRAPTVPAA------PIPPQARPGQAQP---LQAVLLPRAVQVHRTLPPL 326
+HP QPI AP VPA PIPPQA P P V LP A + P+
Sbjct: 230 NHPMAGQPIAIAP-VPAPNQAALPPIPPQALPANGTPNTLASPVTLPAANSAVQNAQPV 287
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -1
Query: 490 PVTKALPDSHPQPIRRAPTVPAAP-IPPQARP 398
P ALP P P P VPA P IP P
Sbjct: 526 PPGMALPPGMPAPFPGYPAVPAMPGIPGATAP 557
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,277,439
Number of Sequences: 5004
Number of extensions: 46305
Number of successful extensions: 139
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -