Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0356.Seq
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 35 0.043
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 32 0.31
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5) 31 0.71
SB_34828| Best HMM Match : W2 (HMM E-Value=6.9) 31 0.93
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 29 2.9
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_56858| Best HMM Match : AT_hook (HMM E-Value=3.7) 29 3.8
SB_52167| Best HMM Match : Extensin_2 (HMM E-Value=3.6) 29 3.8
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_35595| Best HMM Match : AT_hook (HMM E-Value=3.7) 29 3.8
SB_34667| Best HMM Match : AT_hook (HMM E-Value=3.7) 29 3.8
SB_32994| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_23956| Best HMM Match : AT_hook (HMM E-Value=3.7) 29 3.8
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 29 3.8
SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11) 29 3.8
SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10) 29 3.8
SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05) 29 3.8
SB_769| Best HMM Match : Retrotrans_gag (HMM E-Value=0.32) 29 3.8
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 28 5.0
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_40649| Best HMM Match : AT_hook (HMM E-Value=3.7) 28 6.6
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33) 28 6.6
SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61) 28 6.6
SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 28 6.6
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 27 8.7
SB_42307| Best HMM Match : AT_hook (HMM E-Value=3.7) 27 8.7
SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9) 24 9.4
>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
Length = 638
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -1
Query: 472 PDSHPQPIRRAPTVPAAPIPPQ--ARPGQAQPLQAVLLPRAVQVHRTLPPLR 323
PD P AP +P P+PP+ PG + P + P H PPLR
Sbjct: 461 PDEEKPPPPPAPALPPLPLPPELPGSPGDSPPATSPKQPPLPPKHSNGPPLR 512
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 490 PVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 329
P T +P++ P +P +P AP+ P P P +A+ P LPP
Sbjct: 203 PPTPPMPETPLPP--GSPHIPPAPLHPHIPPAPPNPSKAIATPNPPMPETPLPP 254
>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -1
Query: 430 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVI 302
PA P +RP A P LP+ V R LP L VFPG++
Sbjct: 313 PATAPPSISRPATAPPPVFRGLPQLPPVFRCLPQLPPVFPGLL 355
>SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5)
Length = 130
Score = 31.1 bits (67), Expect = 0.71
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = -1
Query: 490 PVT-KALPDSHPQPIRR----APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 326
P+T + + HP P+RR P+ A+ IPP RP ++P++ P + H +LP
Sbjct: 17 PLTYRPMRGEHP-PVRRDHDSLPSENASTIPPITRPLTSRPIRG-QHPPVRRAHDSLPSE 74
Query: 325 RLVFP 311
RL +P
Sbjct: 75 RLDYP 79
>SB_34828| Best HMM Match : W2 (HMM E-Value=6.9)
Length = 184
Score = 30.7 bits (66), Expect = 0.93
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Frame = -1
Query: 556 PPKATPGSXEGGFWWWIEGNQDPVTKALPDSHPQP------IRRAPTVPAAPIPPQARP 398
PP +TP + + N DP P S P+P IRR P P PPQ+ P
Sbjct: 96 PPNSTPSTAQA------VANNDPTLPTPPFSTPRPRPKAKRIRRLLPTPPPPTPPQSTP 148
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = -1
Query: 436 TVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPP 329
T+P+ P+PP+A G++QP L P+A+++ PP
Sbjct: 1007 TLPSTPLPPKALKVLGESQPSTQRLPPKALKLLGESPP 1044
>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 519
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 490 PVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 383
P + P P P P+ P P+ P+ RP +QP
Sbjct: 45 PPLREPPTPAPTPPPALPSTPTLPLAPRPRPTASQP 80
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = -1
Query: 490 PVTKALPDS-HPQPIRRAPTVP--AAPIPPQARPG--QAQPLQAVLLPRAVQVHRTLPPL 326
P KA P S P P R P+ P A PIPP +P ++P P + +PP
Sbjct: 1029 PKRKASPPSAQPLPPPRKPSPPPSAVPIPPPRKPSPPPSEPAPPPRQPPPPSTSQPVPPP 1088
Query: 325 R 323
R
Sbjct: 1089 R 1089
>SB_56858| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 100
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 505 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 383
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 45 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 84
>SB_52167| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
Length = 287
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 505 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 383
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 232 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 271
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 472 PDSHPQPIRRAP-TVPAAPIPPQARPGQAQPLQA 374
P++ +P ++ P VP + PQA PG P+ A
Sbjct: 112 PENAARPAKKVPIAVPVMGVIPQAMPGMVPPVMA 145
>SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 505 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 383
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 204 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 243
>SB_35595| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 214
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 505 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 383
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 159 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 198
>SB_34667| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 240
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 505 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 383
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 185 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 224
>SB_32994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 505 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 383
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 607 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 646
>SB_23956| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 240
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 505 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 383
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 185 QANNDPVSSCMPDASSQAPQPLPE-PKRPTRARTRPKRYEP 224
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/63 (31%), Positives = 24/63 (38%)
Frame = -1
Query: 490 PVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 311
P A P +P P PP A+P A P AV PR T PP V
Sbjct: 715 PAAAAAPQGYPPSSAPTGYQARGPAPPGAKPRVAAPYGAV--PRPGAPAATAPPGAPVGR 772
Query: 310 GVI 302
G++
Sbjct: 773 GIL 775
>SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)
Length = 1213
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 505 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 383
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 1158 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 1197
>SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1269
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 505 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 383
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 1214 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 1253
>SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)
Length = 1272
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 505 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 383
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 1217 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 1256
>SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 505 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 383
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 620 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 659
>SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05)
Length = 848
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 505 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 383
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 793 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 832
>SB_769| Best HMM Match : Retrotrans_gag (HMM E-Value=0.32)
Length = 500
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 505 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 383
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 445 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 484
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = -1
Query: 553 PKATPGSXEGGFWWWIEGNQDPVTK-ALPDSHPQPIRRAPTVPAAPIPPQARPG 395
P P S GGF P ++ P Q + PT PPQ RPG
Sbjct: 539 PGGPPTSQPGGFQHQQRPGAPPTSQPGFPSPQMQEPMQLPTSQPGGFPPQQRPG 592
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = -1
Query: 502 GNQDPVTKALPDSHPQPIRRAPTVP----AAPIPPQARPGQAQP 383
G Q P + + P P R AP P +AP PP AR G A P
Sbjct: 284 GIQPPPPPSRGAAPPPPSRGAPPPPPSRGSAPPPPPARMGTAPP 327
>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 298 QA*TDFYTSLVKEK*PLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV 155
Q+ +Y VKEK H+ + P RC I+LN WS PC V
Sbjct: 738 QSQKSYYDCWVKEKIFKKGDHVLWFDKKPRRGRC-IKLNRPWSGPCIV 784
>SB_40649| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 240
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 505 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 383
+ N DPV +PD+ Q + P P P + RP + +P
Sbjct: 185 QANNDPVPSCMPDASSQ-APQPPHEPRRPTRARTRPKRYEP 224
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/42 (30%), Positives = 16/42 (38%)
Frame = -1
Query: 487 VTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 362
+TKA P + P P + PT P P P Q P
Sbjct: 15 LTKATPQTTPTPTKPTPTTHTPTKPSPTTPTSTAPTQTTPTP 56
>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
Length = 693
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = -1
Query: 502 GNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQ----AQPLQ 377
G +P ++P S+P P VP P+PP A PG QP+Q
Sbjct: 33 GGFNPPPSSVPVSYPGPPPAMYAVPGMPMPP-AYPGMPTYPPQPMQ 77
>SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61)
Length = 314
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -1
Query: 496 QDPVTKALPDSHPQPIRRA-PTVP-AAPIPPQARPGQAQPLQAVLLP 362
+ P+ P P R + P VP A+P PP ARP P + + P
Sbjct: 34 EPPIDVQFTSPQPMPGRNSSPIVPRASPQPPTARPYGTSPGTSAMSP 80
>SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = -1
Query: 430 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPG 308
P PIP QA PGQA P + P VQ + + P FPG
Sbjct: 5 PMKPIPGQALPGQAIP--GMQGPYQVQPPQGVSPGMPGFPG 43
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = -1
Query: 487 VTKALPDSHPQPIRRAPTVPA----APIPPQARPGQAQPLQAVLLP 362
VT P + P P + P PA AP+PP P P A L P
Sbjct: 743 VTTKSPPAPPLPPKVTPKPPAPPQFAPVPPPCAPIPPMPCSAPLPP 788
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Frame = -1
Query: 556 PPKATPGSXEGGFWWWIE-GNQDPVTKA-LPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 383
PP PG+ I G P + + + P P R P+ P P PP P + P
Sbjct: 172 PPTRLPGNARVNAIDQISIGTSHPTSPSQITQPPPPPPRPPPSPPPPPPPPSPSPPRPPP 231
Query: 382 LQAVLLPRAVQVHRTLPP 329
PR + PP
Sbjct: 232 PPPPSPPRPLAAKLPEPP 249
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 445 RAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 329
R TVP P+PP P Q+ P +L+P + LPP
Sbjct: 629 RPTTVP--PLPPTPPPRQSTPPPLLLIPLLPLLTLPLPP 665
>SB_42307| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 269
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 505 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 383
+ N DPV +PD+ Q + P P P + RP + +P
Sbjct: 214 QANNDPVFSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 253
>SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/66 (25%), Positives = 26/66 (39%)
Frame = -1
Query: 580 VXFQVKRXPPKATPGSXEGGFWWWIEGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQAR 401
V Q K P TP + + G+ PV + P P P P PP ++
Sbjct: 552 VTTQEKPKRPAPTPSQTQVKYM----GSTSPVATSPPPHPPPPAHHVNKPGVPPPPPPSK 607
Query: 400 PGQAQP 383
G+++P
Sbjct: 608 TGKSKP 613
>SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9)
Length = 706
Score = 23.8 bits (49), Expect(2) = 9.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 329 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC 427
W Y N + +C K C+ C WNRCC
Sbjct: 306 WSAEERYNNSCQLGHCKK-ACIG--CPDWNRCC 335
Score = 21.8 bits (44), Expect(2) = 9.4
Identities = 5/9 (55%), Positives = 7/9 (77%)
Frame = +2
Query: 404 CLRWNRCCW 430
C WN+CC+
Sbjct: 346 CPSWNKCCY 354
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,341,420
Number of Sequences: 59808
Number of extensions: 354193
Number of successful extensions: 1176
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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