Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0356.Seq
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80451-2|AAB37837.1| 223|Caenorhabditis elegans Hypothetical pr... 32 0.27
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 31 0.47
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 31 0.82
Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical pr... 30 1.1
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 30 1.1
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical pr... 30 1.4
U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein. 30 1.4
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 29 2.5
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 29 2.5
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 29 2.5
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 29 2.5
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 29 3.3
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 29 3.3
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 28 4.4
AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine r... 28 4.4
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 28 5.8
AF038612-3|AAB92045.2| 432|Caenorhabditis elegans Hypothetical ... 28 5.8
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 28 5.8
AC006680-2|AAK72302.1| 309|Caenorhabditis elegans Serpentine re... 28 5.8
Z92807-2|CAD21652.1| 689|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z92807-1|CAB07264.1| 747|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical pr... 27 7.7
AB039949-1|BAC06512.1| 747|Caenorhabditis elegans kinesin protein. 27 7.7
AB017164-1|BAA32661.1| 689|Caenorhabditis elegans Kinesin like ... 27 7.7
>U80451-2|AAB37837.1| 223|Caenorhabditis elegans Hypothetical
protein F11G11.5 protein.
Length = 223
Score = 32.3 bits (70), Expect = 0.27
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -1
Query: 502 GNQDPVTKALPDSHP--QPIRRAPTVPAAPIPPQARP 398
G+QDPV + LPDS P + + + P+AP P+ +P
Sbjct: 3 GHQDPVKQPLPDSPPTDEGMSSSSAQPSAPSAPEQQP 39
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 31.5 bits (68), Expect = 0.47
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -1
Query: 496 QDPVTKALPDSHPQPI-RRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 332
Q PV +A P+PI ++AP V AP PP+ + QAQP+Q P V + P
Sbjct: 240 QQPVVQA----PPKPIVQQAPVVQQAP-PPKQQQAQAQPVQQPPNPAPVVQQASAP 290
Score = 31.1 bits (67), Expect = 0.62
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = -1
Query: 496 QDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLV 317
Q PV +A P +++AP + A PP QAQ QA P A Q+ PP +V
Sbjct: 85 QKPVAQAPPAQAKPTVQQAPIL-VAQAPPNPPAPQAQQHQAPAPPAARQIPVQQPPKPVV 143
Score = 31.1 bits (67), Expect = 0.62
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = -1
Query: 484 TKALPDSHPQP-IRRAPTVPAAPIPPQARPGQAQPLQ 377
T + + P+P +++APT AAP PP+ P QA P+Q
Sbjct: 303 TPPVQQAPPKPAVQQAPT-RAAPAPPKPAPQQAPPVQ 338
Score = 30.7 bits (66), Expect = 0.82
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = -1
Query: 568 VKRXPPKATPGSXEGGFWWWIEGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQA 389
V++ P +A P + Q+P A+ + +++AP P PP+ P QA
Sbjct: 315 VQQAPTRAAPAPPKPAPQQAPPVQQNPPKPAVQQAQAPVVQQAPAPPVQQAPPKPTPQQA 374
Query: 388 QPLQ 377
P++
Sbjct: 375 PPVR 378
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Frame = -1
Query: 496 QDPVTKALPDSHP-----QPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 332
Q PV + P + P Q AP A PI Q +P Q Q QA + + V + P
Sbjct: 19 QVPVIQQAPPNSPAQQQQQAQAHAPPAQAKPIVQQTQPAQKQQAQAPPAAQQIPVVQQAP 78
Query: 331 P 329
P
Sbjct: 79 P 79
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Frame = -1
Query: 496 QDPVTKALPDSHPQP------IRRAPTVPAAPIPPQARPGQAQPL 380
Q PV + P S PQ +++AP V A P A+P Q QP+
Sbjct: 199 QAPVAQQAPPSQPQQAQAQPVVQQAPPVQQASPKPVAQPVQQQPV 243
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 30.7 bits (66), Expect = 0.82
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = -1
Query: 556 PPKATPGSXEGGFWWWIEGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQ 377
P + P + I+ N + + P+P R+ + AP+ P ARP P
Sbjct: 693 PKQTPPPTHNSNVLPHIDENDHDEENDINEEPPKPPRKKKPIAEAPLRPPARPAPIVPTS 752
Query: 376 AVL-LPRAVQVHRTLPPLRLVFP 311
A L L A + + P R + P
Sbjct: 753 AGLSLVLAASLPTSSTPSRFLNP 775
>Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical
protein C44H9.6 protein.
Length = 610
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Frame = +2
Query: 329 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC----WHCRCS 445
W+KRP Y R R ++ K LP + + C W C C+
Sbjct: 567 WKKRPYYRRRQRKRSAQKEKSLPESFQAMGKSCAKMVWRCICN 609
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/57 (36%), Positives = 22/57 (38%)
Frame = -1
Query: 499 NQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 329
N PV P +PQ AP P AP P A P A P Q P H PP
Sbjct: 90 NAVPVPAPPPAPYPQHAVPAPAPPPAPYPQHAVPAPA-PYQQQPPPPPPPPHYPPPP 145
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 472 PDSHPQPIRRAPTVPAAPIPPQARPGQAQPL 380
P +PQ AP P AP P A P A PL
Sbjct: 54 PAPYPQQAVPAPAPPPAPYPQHAVPAPAPPL 84
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -1
Query: 499 NQDPVTKALPDSHPQPIRRAPTVPAAPIPPQ--ARPGQAQPLQAVLLPRAVQVHRTLPPL 326
NQ P P + QP+ P AP+P Q A+P Q P A Q+ RT P+
Sbjct: 592 NQQPFFNQQPMFNQQPMYLQPAFNQAPLPYQYPAQPSQFNPFLASFRRFKRQIGRTPYPI 651
>Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical
protein R08B4.1a protein.
Length = 1137
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -1
Query: 499 NQDPVTKALPDSHPQPIRRAPTVPAAPIPPQ--ARPGQAQPLQAVLLPRAVQVHRTLPPL 326
NQ P P + QP+ P AP+P Q A+P Q P A Q+ RT P+
Sbjct: 592 NQQPFFNQQPMFNQQPMYLQPAFNQAPLPYQYPAQPSQFNPFLASFRRFKRQIGRTPYPI 651
>U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein.
Length = 790
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -1
Query: 499 NQDPVTKALPDSHPQPIRRAPTVPAAPIPPQ--ARPGQAQPLQAVLLPRAVQVHRTLPPL 326
NQ P P + QP+ P AP+P Q A+P Q P A Q+ RT P+
Sbjct: 245 NQQPFFNQQPMFNQQPMYLQPAFNQAPLPYQYPAQPSQFNPFLASFRRFKRQIGRTPYPI 304
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 490 PVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 362
P ++ + P P VP +PPQ RP Q P+Q P
Sbjct: 338 PTSQPVQVMTPPPTLPPVQVPIQTLPPQTRPPQLPPVQITQPP 380
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 490 PVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 362
P ++ + P P VP +PPQ RP Q P+Q P
Sbjct: 435 PTSQPVQVMTPPPTLPPVQVPIQTLPPQTRPPQLPPVQITQPP 477
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = -1
Query: 493 DPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQA 374
+ T A P S PQ +AP V AAP P QA P QA
Sbjct: 585 EAATAARPPSTPQA-PQAPPVQAAPAPVQAPQAPQAPPQA 623
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = -1
Query: 493 DPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQA 374
+ T A P S PQ +AP V AAP P QA P QA
Sbjct: 585 EAATAARPPSTPQA-PQAPPVQAAPAPVQAPQAPQAPPQA 623
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical
protein C06B8.7 protein.
Length = 3118
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Frame = -1
Query: 538 GSXEGGFWWWIEGNQD--PVTKALPDSH 461
G +GGFW W N D P PD H
Sbjct: 171 GYSDGGFWKWFRRNNDTYPFVMPKPDCH 198
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -1
Query: 490 PVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 311
P P P+P R P +PA+P PP RP ++P+ + L Q + L P V P
Sbjct: 86 PAKPTPPPPPPKPTIRPPPIPASP-PP--RPPASEPV-GIPLYSEKQHQQQLRPTTAVSP 141
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -1
Query: 490 PVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 311
P P P+P R P +PA+P PP RP ++P+ + L Q + L P V P
Sbjct: 308 PAKPTPPPPPPKPTIRPPPIPASP-PP--RPPASEPV-GIPLYSEKQHQQQLRPTTAVSP 363
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -1
Query: 460 PQPIRRAPTVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPPLRL 320
P P+ RA P AP RP G A+P A L P Q R PP R+
Sbjct: 126 PMPVSRAGGPPRAPTSMGGRPMTGMARPPTAGLRPVTQQGLRA-PPSRM 173
>AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine
receptor, class h protein247 protein.
Length = 325
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 10 YVYYLGNTITFFFFPVQNRGFLCMLIKVKQR 102
++ + N ITFF PV G C+L K +R
Sbjct: 15 FLISISNVITFFEIPVCTFGAYCILFKTPER 45
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -1
Query: 439 PTVP-AAPIPPQARPGQAQP 383
P++P P+PPQ PGQA P
Sbjct: 406 PSLPDMGPLPPQTAPGQAAP 425
>AF038612-3|AAB92045.2| 432|Caenorhabditis elegans Hypothetical
protein F13B6.3 protein.
Length = 432
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -1
Query: 490 PVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 383
PVT + P + P+P + T P PP P P
Sbjct: 345 PVTTSSPATTPKPTAKPTTAPECTCPPTTFPTTRAP 380
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Frame = -1
Query: 490 PVTKALPDSHPQPIRRAPTVPAAPIPPQ---ARPGQ--AQPLQAVLLPRAVQVHRTLP 332
P + + P +AP P AP+ P+ ARP +P AV RA Q+ + P
Sbjct: 255 PKAPVVAPTRRAPSPKAPVAPVAPVKPKPFVARPAPNFGKPRAAVAPARAPQITQRAP 312
>AC006680-2|AAK72302.1| 309|Caenorhabditis elegans Serpentine
receptor, class x protein9 protein.
Length = 309
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -3
Query: 263 GKIAFASKTYSIFLTISVRISVFNTTKHDLEYSL*CLRF*ILLND 129
G + F+S +SIF ++S+ ISVF + S+ + F +++D
Sbjct: 8 GVVLFSSSIFSIFSSVSIFISVFKLAFISRKSSIYVIAFFNIISD 52
>Z92807-2|CAD21652.1| 689|Caenorhabditis elegans Hypothetical
protein K11D9.1b protein.
Length = 689
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = -1
Query: 490 PVTKALPDSHPQPIRRAPT--VPAAPIPPQAR 401
PV A P P P RRAP+ AAP P R
Sbjct: 127 PVRMAPPSEKPLPTRRAPSPKEDAAPAPKSTR 158
>Z92807-1|CAB07264.1| 747|Caenorhabditis elegans Hypothetical
protein K11D9.1a protein.
Length = 747
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = -1
Query: 490 PVTKALPDSHPQPIRRAPT--VPAAPIPPQAR 401
PV A P P P RRAP+ AAP P R
Sbjct: 185 PVRMAPPSEKPLPTRRAPSPKEDAAPAPKSTR 216
>Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical
protein T12G3.1 protein.
Length = 693
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 499 NQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 362
N P+ +A P S P P +PT+ +P A+ + P LP
Sbjct: 277 NPAPMPQAPPVSTPVPFPPSPTIGNGAVPKPAQEPRIPPSPTSALP 322
>AB039949-1|BAC06512.1| 747|Caenorhabditis elegans kinesin protein.
Length = 747
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = -1
Query: 490 PVTKALPDSHPQPIRRAPT--VPAAPIPPQAR 401
PV A P P P RRAP+ AAP P R
Sbjct: 185 PVRMAPPSEKPLPTRRAPSPKEDAAPAPKSTR 216
>AB017164-1|BAA32661.1| 689|Caenorhabditis elegans Kinesin like
protein (klp-7) protein.
Length = 689
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = -1
Query: 490 PVTKALPDSHPQPIRRAPT--VPAAPIPPQAR 401
PV A P P P RRAP+ AAP P R
Sbjct: 127 PVRMAPPSEKPLPTRRAPSPKEDAAPAPKSTR 158
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,838,470
Number of Sequences: 27780
Number of extensions: 269551
Number of successful extensions: 963
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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