Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0356.Seq
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33790.1 68415.m04144 pollen Ole e 1 allergen and extensin fa... 32 0.33
At1g26150.1 68414.m03192 protein kinase family protein similar t... 31 0.58
At1g13050.1 68414.m01513 expressed protein 31 0.77
At3g11000.1 68416.m01328 expressed protein 29 2.4
At2g21140.1 68415.m02508 hydroxyproline-rich glycoprotein family... 29 2.4
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 29 2.4
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 29 2.4
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 29 3.1
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 29 3.1
At5g48360.1 68418.m05975 formin homology 2 domain-containing pro... 28 5.4
At5g61090.1 68418.m07665 proline-rich family protein contains pr... 27 7.2
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 27 7.2
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family... 27 7.2
At5g57625.1 68418.m07199 allergen V5/Tpx-1-related family protei... 27 9.5
At5g38560.1 68418.m04662 protein kinase family protein contains ... 27 9.5
At5g07150.1 68418.m00815 leucine-rich repeat family protein cont... 27 9.5
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME... 27 9.5
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 27 9.5
At1g75000.1 68414.m08707 GNS1/SUR4 membrane family protein conta... 27 9.5
>At2g33790.1 68415.m04144 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245, SP|Q03211 Pistil-specific
extensin-like protein precursor (PELP) {Nicotiana
tabacum}; contains Pfam profile PF01190: Pollen proteins
Ole e I family
Length = 239
Score = 31.9 bits (69), Expect = 0.33
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = -1
Query: 502 GNQDPVTKALPDSHPQPIRRAPTVP--AAPIPPQARPGQAQPLQAVLLPRAVQVHR--TL 335
G+ DP +LP P P + PT+P API A P P++ LP A + TL
Sbjct: 31 GSSDPF-HSLPQHLPLPPIKLPTLPPAKAPIKLPAYPPAKAPIKLPTLPPAKAPIKLPTL 89
Query: 334 PPLR 323
PP++
Sbjct: 90 PPIK 93
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 31.1 bits (67), Expect = 0.58
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -1
Query: 499 NQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQPL-QAVLLPRAVQVHRTLPP 329
N P K +P SH P R P+ PA+ IPP R + P + P + H + PP
Sbjct: 165 NPLPPPKLVPPSHSPP-RHLPSPPASEIPPPPRHLPSPPASERPSTPPSDSEHPSPPP 221
Score = 27.9 bits (59), Expect = 5.4
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = -1
Query: 493 DPVTKALPDSH---PQPIRRAPTVP-AAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 326
+PV+ P+S P P PT P +P PP P P LP LPP
Sbjct: 113 NPVSSPPPESSPPPPPPTEAPPTTPITSPSPPTNPP--PPPESPPSLPAPDPPSNPLPPP 170
Query: 325 RLVFP 311
+LV P
Sbjct: 171 KLVPP 175
>At1g13050.1 68414.m01513 expressed protein
Length = 317
Score = 30.7 bits (66), Expect = 0.77
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 472 PDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQ 377
P S P P+R P P+PP+ P A+PLQ
Sbjct: 68 PSSRPLPLR-----PEEPLPPRHNPNSARPLQ 94
>At3g11000.1 68416.m01328 expressed protein
Length = 488
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -1
Query: 514 WWIEGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAV 371
+W E ++ K L P P R PT+ +PP +P A L +
Sbjct: 124 FWFELDRGQTNKLLRLFKPSPSVRPPTISRDAVPPPRKPIPASSLAQI 171
>At2g21140.1 68415.m02508 hydroxyproline-rich glycoprotein family
protein identical to proline-rich protein 2 [Arabidopsis
thaliana] gi|7620011|gb|AAF64549
Length = 321
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -1
Query: 460 PQPIRRAPTV-PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 326
P PI + P V P P PP+ +P + P V +T PPL
Sbjct: 219 PVPIYKPPVVIPKKPCPPKIHKPIYKPPVPIYKPPVVIPKKTFPPL 264
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 29.1 bits (62), Expect = 2.4
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = -1
Query: 589 VIGVXFQVKRXPPKATPGSXEGGFWWWIEGNQDPVTKALP-DSHPQPIRRAPTVPAAPIP 413
+ GV Q PP ATP PV+ P + P P+ AP PA P P
Sbjct: 15 IAGVTGQAPTSPPTATPAPPTPTTPP-PAATPPPVSAPPPVTTSPPPVTTAPP-PANPPP 72
Query: 412 PQARPGQAQPLQAVLLPRA 356
P + P A P A P A
Sbjct: 73 PVSSPPPASPPPATPPPVA 91
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 29.1 bits (62), Expect = 2.4
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = -1
Query: 589 VIGVXFQVKRXPPKATPGSXEGGFWWWIEGNQDPVTKALP-DSHPQPIRRAPTVPAAPIP 413
+ GV Q PP ATP PV+ P + P P+ AP PA P P
Sbjct: 15 IAGVTGQAPTSPPTATPAPPTPTTPP-PAATPPPVSAPPPVTTSPPPVTTAPP-PANPPP 72
Query: 412 PQARPGQAQPLQAVLLPRA 356
P + P A P A P A
Sbjct: 73 PVSSPPPASPPPATPPPVA 91
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -1
Query: 460 PQPIRRAPTVPAAPIPPQARPG-QAQPLQAVLLPRAVQVHRTLPPLRLVFPG 308
P P R +P P PP P A+ L P V+ LPP L+F G
Sbjct: 58 PPPAMRRRVLPRPPPPPPPLPMFDAEVLCCCYPPTRVRREAPLPPPPLIFVG 109
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = -1
Query: 472 PDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 329
P P P+RR +P P PP R P + R V PP
Sbjct: 27 PPPPPPPMRRRAPLPPPPPPPMRRRAPLPPPPPPAMRRRVLPRPPPPP 74
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -1
Query: 496 QDPVTKALPDS---HPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTL 335
Q+ ++++ P S HPQ ++P +P+ P+++ L+ + V+ HR L
Sbjct: 36 QETLSQSPPQSPLFHPQSPPEPKSLPLSPLSPKSKEEPESQTMTPLMSKHVKTHRNL 92
>At5g48360.1 68418.m05975 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 782
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Frame = -1
Query: 454 PIRRAPTVPAAPIPPQAR------PGQAQPLQAVLLPRAVQVHRTLPPLRL 320
P+ +P P P+PP P + A++LPR+ + H T P L L
Sbjct: 54 PLESSPPSPPPPLPPTPPTTFAVFPTFPANISALVLPRSSKPHHTSPTLLL 104
>At5g61090.1 68418.m07665 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420;
common family members: At4g18570, At3g25690, At4g04980
[Arabidopsis thaliana]
Length = 344
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Frame = -1
Query: 484 TKALPDSHPQ-PIRRAPT-VPAAPIPPQARPGQAQPLQAVLLP---RAVQVHRTLPPLR 323
T P S P PI P VPA P P RP A+P + P R + +TL P R
Sbjct: 100 TPEAPRSVPACPIPEIPRPVPARPTPETPRPVTARPTPEIPRPVPARPISEVQTLVPTR 158
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -1
Query: 463 HPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQV--HRTLPP 329
HPQ + P +P +PP + PL LPR +Q+ H +PP
Sbjct: 580 HPQQMLPMPNMPHHQLPPSSH----MPLHPHHLPRPMQMPPHGHMPP 622
>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 340
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -1
Query: 499 NQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 332
+Q P T L P P + ++P+ P PP + A+P+ + + + RT P
Sbjct: 185 HQIPTTIVLSLPPPPPQSLSLSLPSPPQPPPSSSFHAEPIPPTVGTSSTKRRRTTP 240
>At5g57625.1 68418.m07199 allergen V5/Tpx-1-related family protein
low similarity to SP|Q40374 Pathogenesis-related protein
PR-1 precursor {Medicago truncatula}; contains Pfam
profile PF00188: SCP-like extracellular protein
Length = 207
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 475 LPDSHPQPIRRAPTVPAAPIPPQAR 401
LP P+P+ R PT P+ P AR
Sbjct: 49 LPSPSPKPVYRPPTTPSLPAGSIAR 73
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -1
Query: 460 PQPIRRAPTVPAAPIP--PQARPGQAQP 383
P P++ PT P+AP P P P Q+ P
Sbjct: 22 PPPLQTQPTTPSAPPPVTPPPSPPQSPP 49
>At5g07150.1 68418.m00815 leucine-rich repeat family protein
contains weak similarity to LRR receptor-like protein
kinase [Nicotiana tabacum] gi|7672732|gb|AAF66615;
contains Pfam PF00560 domain Leucine Rich Repeat
Length = 553
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -1
Query: 478 ALPDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVII 299
A P + Q I VP P P Q P Q P Q +P AV ++ + GV++
Sbjct: 181 ASPPTETQVIPNPSPVP--PPPAQPPPAQTPPPQLSEVPHAVNKKKSHKSKMYIIVGVLV 238
>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
protein [Arabidopsis thaliana] GI:21743571; contains Pfam
profile PF00730: HhH-GPD superfamily base excision DNA
repair protein
Length = 1729
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 460 PQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 362
P P R+ T P+PP++ P A P+ + LP
Sbjct: 1402 PAPEERSLTSATIPVPPESYPPVAIPMIELPLP 1434
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Frame = -1
Query: 505 EGNQDPVTKALPDSHPQPIRR--APTVPAAPIPPQARPGQAQPLQAVLLP 362
+G P P S P P +PT P +P PP P P V P
Sbjct: 69 DGGYTPPAPVPPVSPPPPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPP 118
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -1
Query: 472 PDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 362
P P P +PT P +P PP P P V P
Sbjct: 100 PPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPP 136
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -1
Query: 472 PDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 362
P P P +PT P +P PP P P V P
Sbjct: 118 PPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPP 154
>At1g75000.1 68414.m08707 GNS1/SUR4 membrane family protein contains
Pfam profile PF01151: GNS1/SUR4 family
Length = 281
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 378 RQFFYLGRFKYIGRFLHFV*CFQESSFRREQTFTQAWSRKNSLC 247
R FF+ F Y+ RFLH F RR+ +F Q ++ + LC
Sbjct: 125 RVFFWSYAF-YLSRFLHLFRTFFSVIRRRKLSFFQLINQSSLLC 167
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,962,869
Number of Sequences: 28952
Number of extensions: 245320
Number of successful extensions: 835
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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