Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0355.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                112   2e-25
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           87   7e-18
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              79   3e-15
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                71   6e-13
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     41   8e-04
SB_30236| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)                      29   3.3  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              28   4.4  
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   28   4.4  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              28   5.8  
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)        27   7.6  
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)           27   7.6  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  112 bits (270), Expect = 2e-25
 Identities = 50/52 (96%), Positives = 51/52 (98%)
 Frame = +1

Query: 100 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIK 255
           MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIK
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIK 52


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 87.4 bits (207), Expect = 7e-18
 Identities = 39/83 (46%), Positives = 58/83 (69%)
 Frame = +3

Query: 246 FHQNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQXIVGVNKMDS 425
           F  NMI+G +QAD  VL+++A  GEFE G  + GQTREHA+LA T GVK  ++ VNKMD 
Sbjct: 235 FVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHLVILVNKMDD 294

Query: 426 TEPPYSEPRFEEXKKEVSSYIQE 494
               ++E R+EE K +++ ++++
Sbjct: 295 PTVKWNEERYEEIKVKLTPFLKK 317



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 28/71 (39%), Positives = 49/71 (69%)
 Frame = +1

Query: 40  YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVT 219
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER++G T+++    F+T   + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225

Query: 220 IIDAPGHRDFI 252
           ++DAPGH+ F+
Sbjct: 226 LLDAPGHKSFV 236


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 37/59 (62%), Positives = 44/59 (74%)
 Frame = +3

Query: 246 FHQNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQXIVGVNKMD 422
           F  NMITG +QAD A+L+V A TGEFEAG    GQTREHA+L  +LGV Q IV +NK+D
Sbjct: 26  FIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREHAILVRSLGVTQLIVAINKLD 84



 Score = 37.9 bits (84), Expect = 0.005
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = +1

Query: 172 IDIALWKFETSKYYVTIIDAPGHRDFI 252
           +D+ L +F+T    +T++DAPGH+DFI
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFI 27


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 70.9 bits (166), Expect = 6e-13
 Identities = 31/34 (91%), Positives = 33/34 (97%)
 Frame = +1

Query: 1   VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 102
           VDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 16  VDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 25/82 (30%), Positives = 40/82 (48%)
 Frame = +1

Query: 4   DSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIA 183
           D+GK+T T  L+   G I         +EA  +     K     D ++ ER+RGI++  +
Sbjct: 20  DAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGISVATS 70

Query: 184 LWKFETSKYYVTIIDAPGHRDF 249
           +  F      + I+D PGH+DF
Sbjct: 71  VLAFNYRDKKINILDTPGHKDF 92


>SB_30236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 24/98 (24%), Positives = 45/98 (45%)
 Frame = +1

Query: 55  IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAP 234
           +D + +  FE+E  E  K  +  A + +     RE  ++        +++KYY+T +D  
Sbjct: 110 VDPKNVTTFEREYYEATKSLWSDAGMQECYDRRREYQLS--------DSAKYYLTDLDRL 161

Query: 235 GHRDFIKT*SQEPLRLIALCSS*LPVPVNSKLVSLRTV 348
              D++ T  Q+ LR  A  S  +  P + + +  R V
Sbjct: 162 AKPDYLPT-EQDVLRARAPTSGIIEYPFDLETIIFRMV 198


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 165 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 25
           TT+T S     YPS+   +  +F        D T  N TT V  +T+
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282



 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 165 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 25
           TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 437 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 483


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +1

Query: 130  VLDKLKAERERGITI 174
            VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991


>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
          Length = 737

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -3

Query: 174 DCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 25
           D  TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 344 DFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393



 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 165 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 25
           TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 548 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 13/54 (24%)
 Frame = +1

Query: 136 DKLKAERERGITIDIALWKFETSK-------------YYVTIIDAPGHRDFIKT 258
           DK    +ERGIT+D+    F+ +                +T++D PGH   IKT
Sbjct: 65  DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKT 118


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
 Frame = -2

Query: 487  MYEDTS---FXISSNLGSLYGGSVESILFTPTMXCLTPRVKASKAC------SRV*PFLE 335
            +Y+D S     +S N   L   ++E IL TPT    +    + K C      +   P   
Sbjct: 796  LYQDPSKLTALLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPS 855

Query: 334  IPASNSPVPAAT 299
            +   NSP+P+ T
Sbjct: 856  VTNGNSPIPSGT 867


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/79 (22%), Positives = 35/79 (44%)
 Frame = +3

Query: 258 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQXIVGVNKMDSTEPP 437
           M+ G +  D A+L++A              QT EH      + +K  ++  NK+D  +  
Sbjct: 81  MLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHILILQNKIDLVKES 134

Query: 438 YSEPRFEEXKKEVSSYIQE 494
            ++ ++++  K V   I E
Sbjct: 135 QAKDQYDQILKFVQGTIAE 153


>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
          Length = 1960

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 165 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 25
           TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 282


>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
          Length = 572

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 165 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 25
           TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 18  TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 64



 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 165 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 25
           TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 420 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 466


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,533,887
Number of Sequences: 59808
Number of extensions: 359462
Number of successful extensions: 878
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)