Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0355.Seq
(548 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 183 7e-47
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 183 7e-47
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 183 7e-47
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 183 7e-47
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 109 2e-24
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 106 1e-23
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 106 1e-23
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 93 9e-20
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 53 2e-07
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 53 2e-07
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 46 1e-05
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 46 2e-05
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 44 5e-05
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 42 2e-04
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 42 2e-04
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 42 2e-04
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 31 0.41
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 30 0.95
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 30 0.95
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 1.7
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 1.7
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z73908-5|CAA98129.2| 325|Caenorhabditis elegans Hypothetical pr... 27 6.7
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 183 bits (446), Expect = 7e-47
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +1
Query: 1 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 180
VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI
Sbjct: 16 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 75
Query: 181 ALWKFETSKYYVTIIDAPGHRDFIK 255
ALWKFET+KYY+TIIDAPGHRDFIK
Sbjct: 76 ALWKFETAKYYITIIDAPGHRDFIK 100
Score = 95.1 bits (226), Expect = 3e-20
Identities = 45/52 (86%), Positives = 48/52 (92%)
Frame = +3
Query: 246 FHQNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQXI 401
F +NMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQ +
Sbjct: 98 FIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLV 149
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 183 bits (446), Expect = 7e-47
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +1
Query: 1 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 180
VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI
Sbjct: 16 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 75
Query: 181 ALWKFETSKYYVTIIDAPGHRDFIK 255
ALWKFET+KYY+TIIDAPGHRDFIK
Sbjct: 76 ALWKFETAKYYITIIDAPGHRDFIK 100
Score = 45.2 bits (102), Expect(2) = 7e-11
Identities = 19/32 (59%), Positives = 24/32 (75%)
Frame = +3
Query: 399 IVGVNKMDSTEPPYSEPRFEEXKKEVSSYIQE 494
+V NKMDSTEPP+SE RF E EVS +I++
Sbjct: 115 VVACNKMDSTEPPFSEARFTEITNEVSGFIKK 146
Score = 38.7 bits (86), Expect(2) = 7e-11
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +3
Query: 246 FHQNMITGTSQADCAVLIVA 305
F +NMITGTSQADCAVL+VA
Sbjct: 98 FIKNMITGTSQADCAVLVVA 117
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 183 bits (446), Expect = 7e-47
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +1
Query: 1 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 180
VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI
Sbjct: 16 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 75
Query: 181 ALWKFETSKYYVTIIDAPGHRDFIK 255
ALWKFET+KYY+TIIDAPGHRDFIK
Sbjct: 76 ALWKFETAKYYITIIDAPGHRDFIK 100
Score = 135 bits (326), Expect = 2e-32
Identities = 65/83 (78%), Positives = 71/83 (85%)
Frame = +3
Query: 246 FHQNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQXIVGVNKMDS 425
F +NMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQ IV NKMDS
Sbjct: 98 FIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDS 157
Query: 426 TEPPYSEPRFEEXKKEVSSYIQE 494
TEPP+SE RF E EVS +I++
Sbjct: 158 TEPPFSEARFTEITNEVSGFIKK 180
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 183 bits (446), Expect = 7e-47
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +1
Query: 1 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 180
VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI
Sbjct: 16 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 75
Query: 181 ALWKFETSKYYVTIIDAPGHRDFIK 255
ALWKFET+KYY+TIIDAPGHRDFIK
Sbjct: 76 ALWKFETAKYYITIIDAPGHRDFIK 100
Score = 135 bits (326), Expect = 2e-32
Identities = 65/83 (78%), Positives = 71/83 (85%)
Frame = +3
Query: 246 FHQNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQXIVGVNKMDS 425
F +NMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQ IV NKMDS
Sbjct: 98 FIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDS 157
Query: 426 TEPPYSEPRFEEXKKEVSSYIQE 494
TEPP+SE RF E EVS +I++
Sbjct: 158 TEPPFSEARFTEITNEVSGFIKK 180
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 109 bits (261), Expect = 2e-24
Identities = 49/52 (94%), Positives = 50/52 (96%)
Frame = +1
Query: 1 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 156
VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK +
Sbjct: 16 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 106 bits (254), Expect = 1e-23
Identities = 47/84 (55%), Positives = 61/84 (72%)
Frame = +1
Query: 1 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 180
VD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+ + ERERG+T+DI
Sbjct: 179 VDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETEEERERGVTMDI 238
Query: 181 ALWKFETSKYYVTIIDAPGHRDFI 252
FETS + ++DAPGH+DFI
Sbjct: 239 GRTSFETSHRRIVLLDAPGHKDFI 262
Score = 92.3 bits (219), Expect = 2e-19
Identities = 45/81 (55%), Positives = 58/81 (71%)
Frame = +3
Query: 246 FHQNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQXIVGVNKMDS 425
F NMITGTSQAD A+L+V A TGEFE G GQT+EHALL +LGV Q IV VNK+D+
Sbjct: 261 FISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDT 320
Query: 426 TEPPYSEPRFEEXKKEVSSYI 488
+ +S+ RF+E K +S ++
Sbjct: 321 VD--WSQDRFDEIKNNLSVFL 339
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 106 bits (254), Expect = 1e-23
Identities = 47/84 (55%), Positives = 61/84 (72%)
Frame = +1
Query: 1 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 180
VD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+ + ERERG+T+DI
Sbjct: 197 VDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETEEERERGVTMDI 256
Query: 181 ALWKFETSKYYVTIIDAPGHRDFI 252
FETS + ++DAPGH+DFI
Sbjct: 257 GRTSFETSHRRIVLLDAPGHKDFI 280
Score = 92.3 bits (219), Expect = 2e-19
Identities = 45/81 (55%), Positives = 58/81 (71%)
Frame = +3
Query: 246 FHQNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQXIVGVNKMDS 425
F NMITGTSQAD A+L+V A TGEFE G GQT+EHALL +LGV Q IV VNK+D+
Sbjct: 279 FISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDT 338
Query: 426 TEPPYSEPRFEEXKKEVSSYI 488
+ +S+ RF+E K +S ++
Sbjct: 339 VD--WSQDRFDEIKNNLSVFL 357
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 93.5 bits (222), Expect = 9e-20
Identities = 40/84 (47%), Positives = 60/84 (71%)
Frame = +1
Query: 1 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 180
VD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D ERE+G T+++
Sbjct: 118 VDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMDTNDEEREKGKTVEV 177
Query: 181 ALWKFETSKYYVTIIDAPGHRDFI 252
FET K + TI+DAPGH+ F+
Sbjct: 178 GRAYFETEKRHFTILDAPGHKSFV 201
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/83 (44%), Positives = 56/83 (67%)
Frame = +3
Query: 246 FHQNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQXIVGVNKMDS 425
F NMI G +QAD AVL+++A GEFE G + GQTREH++L T GVK ++ VNKMD
Sbjct: 200 FVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDD 259
Query: 426 TEPPYSEPRFEEXKKEVSSYIQE 494
+ E RF+E + +++ ++++
Sbjct: 260 PTVKWEEERFKEIEGKLTPFLRK 282
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 52.8 bits (121), Expect = 2e-07
Identities = 31/71 (43%), Positives = 39/71 (54%)
Frame = +3
Query: 219 HH*CSWTQRFHQNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQX 398
H C F +NMI GTSQ D AVL++AA G E QT+EH +LA +GVK
Sbjct: 112 HTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNM 164
Query: 399 IVGVNKMDSTE 431
+ +NK D E
Sbjct: 165 AIFINKADLVE 175
Score = 40.3 bits (90), Expect = 9e-04
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +1
Query: 133 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIK 255
+DK K E++RGITI++A +E+ + D PGH DFIK
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIK 123
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 52.8 bits (121), Expect = 2e-07
Identities = 31/71 (43%), Positives = 39/71 (54%)
Frame = +3
Query: 219 HH*CSWTQRFHQNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQX 398
H C F +NMI GTSQ D AVL++AA G E QT+EH +LA +GVK
Sbjct: 112 HTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNM 164
Query: 399 IVGVNKMDSTE 431
+ +NK D E
Sbjct: 165 AIFINKADLVE 175
Score = 40.3 bits (90), Expect = 9e-04
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +1
Query: 133 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIK 255
+DK K E++RGITI++A +E+ + D PGH DFIK
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIK 123
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 46.4 bits (105), Expect = 1e-05
Identities = 27/73 (36%), Positives = 39/73 (53%)
Frame = +1
Query: 130 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKT*SQEPLRLIALCSS*LP 309
+LDKL+ ERERGIT+ Y + +ID PGH DF S E R +A+C L
Sbjct: 76 MLDKLQVERERGITVKAQTAALRHRGYLLNLIDTPGHVDF----SAEVSRSLAVCDGILL 131
Query: 310 VPVNSKLVSLRTV 348
+ ++ V +T+
Sbjct: 132 LVAANQGVQAQTI 144
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 46.0 bits (104), Expect = 2e-05
Identities = 31/83 (37%), Positives = 41/83 (49%)
Frame = +1
Query: 1 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 180
VD+GK+T T L+Y G I A + KG+ V D L ERERGIT+
Sbjct: 34 VDAGKTTVTERLLYLAGAIHV---------AGHVDKGNT----VTDFLDIERERGITVQS 80
Query: 181 ALWKFETSKYYVTIIDAPGHRDF 249
A + + + +ID PGH DF
Sbjct: 81 AAVNLDWKGHRINLIDTPGHVDF 103
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 44.4 bits (100), Expect = 5e-05
Identities = 29/83 (34%), Positives = 40/83 (48%)
Frame = +1
Query: 1 VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 180
+DSGK+T T ++Y G ID E+ +G +D + ER+RGITI
Sbjct: 53 IDSGKTTVTERILYYAGRIDSM---------HEV-RGKDDVGATMDFMDLERQRGITIQS 102
Query: 181 ALWKFETSKYYVTIIDAPGHRDF 249
A + + IID PGH DF
Sbjct: 103 AATYVDWHGTNINIIDTPGHVDF 125
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 42.3 bits (95), Expect = 2e-04
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +3
Query: 219 HH*CSWTQRFHQNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--K 392
H C + +NMITG +Q + A+L+VAA G QTREH LLA +GV
Sbjct: 116 HIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLD 168
Query: 393 QXIVGVNKMDSTEPPYSEPR 452
+V +NK+D E P +E R
Sbjct: 169 NIVVFMNKVD--EVPDAETR 186
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +1
Query: 133 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIK 255
+D E+ RGITI+ ++ET+K + ID PGH D+IK
Sbjct: 87 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIK 127
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 42.3 bits (95), Expect = 2e-04
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +3
Query: 219 HH*CSWTQRFHQNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--K 392
H C + +NMITG +Q + A+L+VAA G QTREH LLA +GV
Sbjct: 117 HIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLD 169
Query: 393 QXIVGVNKMDSTEPPYSEPR 452
+V +NK+D E P +E R
Sbjct: 170 NIVVFMNKVD--EVPDAETR 187
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +1
Query: 133 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIK 255
+D E+ RGITI+ ++ET+K + ID PGH D+IK
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIK 128
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 42.3 bits (95), Expect = 2e-04
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +3
Query: 219 HH*CSWTQRFHQNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--K 392
H C + +NMITG +Q + A+L+VAA G QTREH LLA +GV
Sbjct: 117 HIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLD 169
Query: 393 QXIVGVNKMDSTEPPYSEPR 452
+V +NK+D E P +E R
Sbjct: 170 NIVVFMNKVD--EVPDAETR 187
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +1
Query: 133 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIK 255
+D E+ RGITI+ ++ET+K + ID PGH D+IK
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIK 128
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 31.5 bits (68), Expect = 0.41
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -2
Query: 415 LFTPTMXCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 287
LF PT+ C+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 30.3 bits (65), Expect = 0.95
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Frame = +1
Query: 1 VDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGKGSFKYAWVLDKLKAE 153
VD GKST T L+ K G I K +F K+ QE + + + L+K E
Sbjct: 28 VDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKSTAISLFFELEKKDLE 87
Query: 154 RERGI----TIDIALWKFETSKYYVTIIDAPGHRDF 249
+G T+++ K + + + + +ID+PGH DF
Sbjct: 88 FVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDF 123
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 30.3 bits (65), Expect = 0.95
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Frame = +1
Query: 1 VDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGKGSFKYAWVLDKLKAE 153
VD GKST T L+ K G I K +F K+ QE + + + L+K E
Sbjct: 28 VDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKSTAISLFFELEKKDLE 87
Query: 154 RERGI----TIDIALWKFETSKYYVTIIDAPGHRDF 249
+G T+++ K + + + + +ID+PGH DF
Sbjct: 88 FVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDF 123
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 58 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 159
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 58 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 159
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 133 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 249
+D + E+ RGIT+ + + +ID+PGH DF
Sbjct: 58 MDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDF 96
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 133 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 249
+D + E+ RGIT+ + + +ID+PGH DF
Sbjct: 58 MDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDF 96
>Z73908-5|CAA98129.2| 325|Caenorhabditis elegans Hypothetical
protein F53B2.4 protein.
Length = 325
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 516 ISWL*PNLLECMRILPSXFPQ 454
+SWL P LL +R++P FP+
Sbjct: 123 VSWLFPFLLSTLRLIPVYFPR 143
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,975,306
Number of Sequences: 27780
Number of extensions: 263523
Number of successful extensions: 706
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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