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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0355.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ...   166   1e-41
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ...   166   1e-41
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ...   166   1e-41
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ...   166   1e-41
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E...   100   6e-22
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,...    82   3e-16
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide...    44   5e-05
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,...    44   7e-05
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati...    44   7e-05
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati...    44   7e-05
At1g62750.1 68414.m07082 elongation factor Tu family protein sim...    42   2e-04
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative            41   5e-04
At3g22980.1 68416.m02898 elongation factor Tu family protein sim...    35   0.031
At5g13650.2 68418.m01585 elongation factor family protein contai...    35   0.041
At5g13650.1 68418.m01584 elongation factor family protein contai...    35   0.041
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-...    33   0.17 
At3g01360.1 68416.m00057 expressed protein contains Pfam profile...    27   6.2  

>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
           identical to SWISS-PROT:P13905 elongation factor 1-alpha
           (EF-1-alpha) [Arabidopsis thaliana]
          Length = 449

 Score =  166 bits (403), Expect = 1e-41
 Identities = 76/85 (89%), Positives = 79/85 (92%)
 Frame = +1

Query: 1   VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 180
           VDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERERGITIDI
Sbjct: 16  VDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDI 75

Query: 181 ALWKFETSKYYVTIIDAPGHRDFIK 255
           ALWKFET+KYY T+IDAPGHRDFIK
Sbjct: 76  ALWKFETTKYYCTVIDAPGHRDFIK 100



 Score =  122 bits (294), Expect = 2e-28
 Identities = 59/83 (71%), Positives = 70/83 (84%)
 Frame = +3

Query: 246 FHQNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQXIVGVNKMDS 425
           F +NMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ I   NKMD+
Sbjct: 98  FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 157

Query: 426 TEPPYSEPRFEEXKKEVSSYIQE 494
           T P YS+ R++E  KEVSSY+++
Sbjct: 158 TTPKYSKARYDEIIKEVSSYLKK 180


>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score =  166 bits (403), Expect = 1e-41
 Identities = 76/85 (89%), Positives = 79/85 (92%)
 Frame = +1

Query: 1   VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 180
           VDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERERGITIDI
Sbjct: 16  VDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDI 75

Query: 181 ALWKFETSKYYVTIIDAPGHRDFIK 255
           ALWKFET+KYY T+IDAPGHRDFIK
Sbjct: 76  ALWKFETTKYYCTVIDAPGHRDFIK 100



 Score =  122 bits (294), Expect = 2e-28
 Identities = 59/83 (71%), Positives = 70/83 (84%)
 Frame = +3

Query: 246 FHQNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQXIVGVNKMDS 425
           F +NMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ I   NKMD+
Sbjct: 98  FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 157

Query: 426 TEPPYSEPRFEEXKKEVSSYIQE 494
           T P YS+ R++E  KEVSSY+++
Sbjct: 158 TTPKYSKARYDEIIKEVSSYLKK 180


>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score =  166 bits (403), Expect = 1e-41
 Identities = 76/85 (89%), Positives = 79/85 (92%)
 Frame = +1

Query: 1   VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 180
           VDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERERGITIDI
Sbjct: 16  VDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDI 75

Query: 181 ALWKFETSKYYVTIIDAPGHRDFIK 255
           ALWKFET+KYY T+IDAPGHRDFIK
Sbjct: 76  ALWKFETTKYYCTVIDAPGHRDFIK 100



 Score =  122 bits (294), Expect = 2e-28
 Identities = 59/83 (71%), Positives = 70/83 (84%)
 Frame = +3

Query: 246 FHQNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQXIVGVNKMDS 425
           F +NMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ I   NKMD+
Sbjct: 98  FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 157

Query: 426 TEPPYSEPRFEEXKKEVSSYIQE 494
           T P YS+ R++E  KEVSSY+++
Sbjct: 158 TTPKYSKARYDEIIKEVSSYLKK 180


>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score =  166 bits (403), Expect = 1e-41
 Identities = 76/85 (89%), Positives = 79/85 (92%)
 Frame = +1

Query: 1   VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 180
           VDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERERGITIDI
Sbjct: 16  VDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDI 75

Query: 181 ALWKFETSKYYVTIIDAPGHRDFIK 255
           ALWKFET+KYY T+IDAPGHRDFIK
Sbjct: 76  ALWKFETTKYYCTVIDAPGHRDFIK 100



 Score =  122 bits (294), Expect = 2e-28
 Identities = 59/83 (71%), Positives = 70/83 (84%)
 Frame = +3

Query: 246 FHQNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQXIVGVNKMDS 425
           F +NMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ I   NKMD+
Sbjct: 98  FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 157

Query: 426 TEPPYSEPRFEEXKKEVSSYIQE 494
           T P YS+ R++E  KEVSSY+++
Sbjct: 158 TTPKYSKARYDEIIKEVSSYLKK 180


>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
           EF-1-alpha, putative contains similarity to
           SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
           [Aeropyrum pernix]
          Length = 667

 Score =  100 bits (240), Expect = 6e-22
 Identities = 42/84 (50%), Positives = 63/84 (75%)
 Frame = +1

Query: 1   VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 180
           VDSGKST +G L++  G I ++ + K+EKEA+  GKGSF YAW LD+   ERERGIT+ +
Sbjct: 248 VDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV 307

Query: 181 ALWKFETSKYYVTIIDAPGHRDFI 252
           A+  F + +++V ++D+PGH+DF+
Sbjct: 308 AVAYFNSKRHHVVLLDSPGHKDFV 331



 Score = 76.2 bits (179), Expect = 1e-14
 Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
 Frame = +3

Query: 246 FHQNMITGTSQADCAVLIVAAGTGEFEAGISK-NGQTREHALLAFTLGVKQXIVGVNKMD 422
           F  NMI G +QAD A+L++ A  G FEAG     GQTREHA +    GV+Q IV +NKMD
Sbjct: 330 FVPNMIAGATQADAAILVIDASVGAFEAGFDNLKGQTREHARVLRGFGVEQVIVAINKMD 389

Query: 423 STEPPYSEPRFEEXKKEVSSYIQ 491
                YS+ RF+  K+ V S++Q
Sbjct: 390 IV--GYSKERFDLIKQHVGSFLQ 410


>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
           putative similar to EF-1-alpha-related GTP-binding
           protein gi|1009232|gb|AAA79032
          Length = 532

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 38/79 (48%), Positives = 55/79 (69%)
 Frame = +3

Query: 255 NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQXIVGVNKMDSTEP 434
           NMI+G SQAD  VL+++A  GEFE G  + GQTREH  LA TLGV + IV VNKMD    
Sbjct: 195 NMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLIVVVNKMDDPTV 254

Query: 435 PYSEPRFEEXKKEVSSYIQ 491
            +S+ R++E ++++  +++
Sbjct: 255 NWSKERYDEIEQKMVPFLK 273



 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 33/84 (39%), Positives = 56/84 (66%)
 Frame = +1

Query: 1   VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 180
           VD+GKST  G +++  G +D R I+K+EKEA++  + S+  A+++D  + ER +G T+++
Sbjct: 110 VDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTNEEERLKGKTVEV 169

Query: 181 ALWKFETSKYYVTIIDAPGHRDFI 252
               FET     TI+DAPGH+ ++
Sbjct: 170 GRAHFETESTRFTILDAPGHKSYV 193


>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
           identical to SWISS-PROT:P17745 elongation factor Tu,
           chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
          Length = 476

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = +3

Query: 219 HH*CSWTQRFHQNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQX 398
           H  C     + +NMITG +Q D A+L+V+   G          QT+EH LLA  +GV   
Sbjct: 146 HVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP-------QTKEHILLAKQVGVPDM 198

Query: 399 IVGVNKMDSTEPPYSEPRFE-EXKKEVSSY 485
           +V +NK D  +        E E ++ +SSY
Sbjct: 199 VVFLNKEDQVDDAELLELVELEVRELLSSY 228



 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 26/85 (30%), Positives = 39/85 (45%)
 Frame = +1

Query: 1   VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 180
           VD GK+T T  L      I     +K+++               +D    ER RGITI+ 
Sbjct: 88  VDHGKTTLTAALTMALASIGSSVAKKYDE---------------IDAAPEERARGITINT 132

Query: 181 ALWKFETSKYYVTIIDAPGHRDFIK 255
           A  ++ET   +   +D PGH D++K
Sbjct: 133 ATVEYETENRHYAHVDCPGHADYVK 157


>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
           putative similar to mitochondrial elongation factor Tu
           [Arabidopsis thaliana] gi|1149571|emb|CAA61511
          Length = 454

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 18/41 (43%), Positives = 28/41 (68%)
 Frame = +1

Query: 133 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIK 255
           +DK   E++RGITI  A  ++ET+K +   +D PGH D++K
Sbjct: 105 IDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 145



 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 28/89 (31%), Positives = 43/89 (48%)
 Frame = +3

Query: 219 HH*CSWTQRFHQNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQX 398
           H  C     + +NMITG +Q D  +L+V+   G          QT+EH LLA  +GV   
Sbjct: 134 HVDCPGHADYVKNMITGAAQMDGGILVVSGPDGPMP-------QTKEHILLARQVGVPSL 186

Query: 399 IVGVNKMDSTEPPYSEPRFEEXKKEVSSY 485
           +  +NK+D  + P      E   +E+ S+
Sbjct: 187 VCFLNKVDVVDDPELLELVEMELRELLSF 215


>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
           similar to SP|P25039 Elongation factor G 1,
           mitochondrial precursor (mEF-G-1) {Saccharomyces
           cerevisiae}; contains Pfam profiles PF00009: Elongation
           factor Tu GTP binding domain, PF03764: Elongation factor
           G domain IV, PF00679: Elongation factor G C-terminus
          Length = 754

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 31/83 (37%), Positives = 42/83 (50%)
 Frame = +1

Query: 1   VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 180
           +DSGK+T T  +++  G I     E  E   ++ G G+      +D +  ERE+GITI  
Sbjct: 74  IDSGKTTLTERVLFYTGRIH----EIHEVRGRD-GVGA-----KMDSMDLEREKGITIQS 123

Query: 181 ALWKFETSKYYVTIIDAPGHRDF 249
           A        Y V IID PGH DF
Sbjct: 124 AATYCTWKDYKVNIIDTPGHVDF 146


>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
           similar to mitochondrial elongation factor GI:3917 from
           [Saccharomyces cerevisiae]
          Length = 754

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 31/83 (37%), Positives = 42/83 (50%)
 Frame = +1

Query: 1   VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 180
           +DSGK+T T  +++  G I     E  E   ++ G G+      +D +  ERE+GITI  
Sbjct: 74  IDSGKTTLTERVLFYTGRIH----EIHEVRGRD-GVGA-----KMDSMDLEREKGITIQS 123

Query: 181 ALWKFETSKYYVTIIDAPGHRDF 249
           A        Y V IID PGH DF
Sbjct: 124 AATYCTWKDYKVNIIDTPGHVDF 146


>At1g62750.1 68414.m07082 elongation factor Tu family protein
           similar to elongation factor G SP:P34811 [Glycine max
           (Soybean)]
          Length = 783

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 28/83 (33%), Positives = 42/83 (50%)
 Frame = +1

Query: 1   VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 180
           +D+GK+TTT  ++Y  G            +  E+ +G+    W    ++ E+ERGITI  
Sbjct: 105 IDAGKTTTTERILYYTGR---------NYKIGEVHEGTATMDW----MEQEQERGITITS 151

Query: 181 ALWKFETSKYYVTIIDAPGHRDF 249
           A       K+ + IID PGH DF
Sbjct: 152 AATTTFWDKHRINIIDTPGHVDF 174


>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
          Length = 681

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
 Frame = +1

Query: 133 LDKLKAERERGITIDIAL----WKFETSKYYVTIIDAPGHRDFIKT*SQEPLRLIALCSS 300
           LD +  ERERGITI +      + +E + + + +ID PGH DF    S E  R +A C  
Sbjct: 123 LDNMDLERERGITIKLQAARMRYVYEDTPFCLNLIDTPGHVDF----SYEVSRSLAACEG 178

Query: 301 *LPVPVNSKLVSLRTVKPV 357
            L V   S+ V  +T+  V
Sbjct: 179 ALLVVDASQGVEAQTLANV 197


>At3g22980.1 68416.m02898 elongation factor Tu family protein
           similar to eukaryotic translation elongation factor 2
           GB:NP_001952 [Homo sapiens]
          Length = 1015

 Score = 35.1 bits (77), Expect = 0.031
 Identities = 27/83 (32%), Positives = 37/83 (44%)
 Frame = +1

Query: 1   VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 180
           VD GK+T   HLI   GG             +  GK  F     +D L  E+ R IT+  
Sbjct: 18  VDHGKTTLADHLIASSGG--------GVLHPRLAGKLRF-----MDYLDEEQRRAITMKS 64

Query: 181 ALWKFETSKYYVTIIDAPGHRDF 249
           +    +   Y + +ID+PGH DF
Sbjct: 65  SSISLKYKDYSLNLIDSPGHMDF 87


>At5g13650.2 68418.m01585 elongation factor family protein contains
           Pfam profiles: PF00009 elongation factor Tu GTP binding
           domain,PF00679 elongation factor G C-terminus,  PF03144
           elongation factor Tu domain 2
          Length = 676

 Score = 34.7 bits (76), Expect = 0.041
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +1

Query: 130 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 249
           ++D    ERERGITI             V IID PGH DF
Sbjct: 120 IMDSNDLERERGITILSKNTSITYKNTKVNIIDTPGHSDF 159


>At5g13650.1 68418.m01584 elongation factor family protein contains
           Pfam profiles: PF00009 elongation factor Tu GTP binding
           domain,PF00679 elongation factor G C-terminus,  PF03144
           elongation factor Tu domain 2
          Length = 675

 Score = 34.7 bits (76), Expect = 0.041
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +1

Query: 130 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 249
           ++D    ERERGITI             V IID PGH DF
Sbjct: 119 IMDSNDLERERGITILSKNTSITYKNTKVNIIDTPGHSDF 158


>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
           GTP-binding protein GUF1 - Saccharomyces cerevisiae,
           PIR:S50374
          Length = 661

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 41/125 (32%), Positives = 53/125 (42%), Gaps = 9/125 (7%)
 Frame = +1

Query: 1   VDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 180
           +D GKST    L+   G I K             G G  +Y   LDKL  +RERGIT+  
Sbjct: 75  IDHGKSTLADRLMELTGTIKK-------------GHGQPQY---LDKL--QRERGITVKA 116

Query: 181 ALWKF---------ETSKYYVTIIDAPGHRDFIKT*SQEPLRLIALCSS*LPVPVNSKLV 333
                         E S Y + +ID PGH DF    S E  R ++ C   L V   ++ V
Sbjct: 117 QTATMFYENKVEDQEASGYLLNLIDTPGHVDF----SYEVSRSLSACQGALLVVDAAQGV 172

Query: 334 SLRTV 348
             +TV
Sbjct: 173 QAQTV 177


>At3g01360.1 68416.m00057 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 319

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +3

Query: 228 CSWTQRFHQNMITGTSQADCAV-LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQXIV 404
           C     +H+     T Q +C + L+V   TG F    +KNG  R+       LG +   +
Sbjct: 228 CKGHGDYHRAKAIATLQFNCHLALMVVVATGLFSVIANKNGYLRQDHSKYRPLGAELENL 287

Query: 405 GVNKMDSTE 431
               +DS E
Sbjct: 288 STFTLDSDE 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,353,891
Number of Sequences: 28952
Number of extensions: 247390
Number of successful extensions: 633
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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