Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0354.Seq
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q14W31 Cluster: ORF75; n=1; Ranid herpesvirus 2|Rep: OR...    32   8.9  

>UniRef50_Q14W31 Cluster: ORF75; n=1; Ranid herpesvirus 2|Rep: ORF75
           - Ranid herpesvirus 2
          Length = 440

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +1

Query: 112 TNTKCYISF-RCIFFYCTVHFMKHATHLKSKTVIKIVTTS*IKHLLRKNIV 261
           T  +CY+   R + F+C+  F++H T L +   I I+  + + H+L   I+
Sbjct: 214 TGVECYVECDRFLSFFCSKLFLQHRTFLNTANSIAILWLNEVYHMLLPTIL 264


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 441,144,595
Number of Sequences: 1657284
Number of extensions: 7215166
Number of successful extensions: 14600
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 14139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14600
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)