Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0354.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   2.6  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   3.4  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   6.0  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   6.0  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 103 VDATNTKCYISFRCIFFYCTVHFMKHATHL 192
           VD  N    ISF  I  Y T+HF+ +   L
Sbjct: 193 VDDFNDIFGISFLLIISYSTLHFVNYIDDL 222


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 103 VDATNTKCYISFRCIFFYC-TVHFMKHATHL 192
           +D+   KCY   R  +FYC ++ F  H   L
Sbjct: 43  LDSLVFKCYNLRRIYYFYCVSITFNVHLLFL 73


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 163 VHFMKHATHLKSKTVIKIVTTS*IKHLLRKNIV 261
           +HF  HA+ LKSK   K      I+ +L++N V
Sbjct: 414 LHF--HASWLKSKKEFKEELIKFIEEMLQRNDV 444


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 163 VHFMKHATHLKSKTVIKIVTTS*IKHLLRKNIV 261
           +HF  HA+ LKSK   K      I+ +L++N V
Sbjct: 421 LHF--HASWLKSKKEFKEELIKFIEEMLQRNDV 451


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,500
Number of Sequences: 336
Number of extensions: 2260
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)