Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0354.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0729 - 26721730-26722797                                         28   6.5  
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548...    28   6.5  

>11_06_0729 - 26721730-26722797
          Length = 355

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 77  DRCDRETEESMQLIQNVTFHSAVFSSTVPYI 169
           D CD+E E+    +QN+ F S   SS  P I
Sbjct: 238 DGCDKEQEQDRPALQNLMFWSCKGSSDPPKI 268


>06_03_1508 - 30653967-30654245,30654342-30654631,30654773-30654841,
            30654854-30654921,30655016-30655492,30655578-30655874,
            30655974-30656824,30656917-30656990,30657270-30657292,
            30657709-30657772,30658098-30658370,30658511-30658587,
            30658686-30658912
          Length = 1022

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 130  ISFRCIFFYCTVHFMKH 180
            + FRC+ F+C V F KH
Sbjct: 1006 VLFRCVAFFCMVIFQKH 1022


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,207,227
Number of Sequences: 37544
Number of extensions: 175975
Number of successful extensions: 271
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)