Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0354.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9661| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_9661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 437 KMKKFSKLIECRESKFTLALCXVVITLQYF 348
           K KKFSKL  C    +T+AL   +++ +YF
Sbjct: 320 KTKKFSKLEFCLRHPYTIALVERIMSEEYF 349


>SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1643

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 133  SFRCIFFYC-TVHFMKHATHLKSKT 204
            SF+ +  Y  TVHFMKH + +K K+
Sbjct: 1374 SFKEVLLYLPTVHFMKHLSRIKMKS 1398


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,889,552
Number of Sequences: 59808
Number of extensions: 236946
Number of successful extensions: 698
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)