Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0354.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78415-4|CAB01673.2|  281|Caenorhabditis elegans Hypothetical pr...    28   4.4  

>Z78415-4|CAB01673.2|  281|Caenorhabditis elegans Hypothetical
           protein C17G1.5 protein.
          Length = 281

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 180 RNAFKIENSNKNCYNILNKTFIKKKYC*YE 269
           R AF ++    +CY+  N T +KK+ C Y+
Sbjct: 161 RTAFPVDAVTNDCYSAKNLTRLKKQKCSYK 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,891,429
Number of Sequences: 27780
Number of extensions: 194541
Number of successful extensions: 430
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)