Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0354.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   5.3  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   9.2  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    21   9.2  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   9.2  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +3

Query: 93  RLRSRCN*YKMLHFIPLYFLLLYRTFHETRNAFKIENSNKNCYNILNKTFIKKKYC*Y 266
           +++SR +  KML  + + F + +  FH T+    +     + Y  LN+       C Y
Sbjct: 261 QIQSRKSVIKMLSAVVILFFICWAPFH-TQRLLYVYAQESDYYPDLNEWLYILSGCLY 317


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 370 TXHKARVNLDSLHSINFENFFILFRILKG 456
           T H+      +  S+N ENF I  R L G
Sbjct: 32  TGHQEMQGKQNSASLNSENFGIFKRALMG 60


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 370 TXHKARVNLDSLHSINFENFFILFRILKG 456
           T H+      +  S+N ENF I  R L G
Sbjct: 32  TGHQEMQGKQNSASLNSENFGIFKRALMG 60


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 370 TXHKARVNLDSLHSINFENFFILFRILKG 456
           T H+      +  S+N ENF I  R L G
Sbjct: 32  TGHQEMQGKQNSASLNSENFGIFKRALMG 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,648
Number of Sequences: 438
Number of extensions: 2652
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)