Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0353.Seq
(508 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 21 4.8
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 21 4.8
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 21 4.8
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 21 4.8
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 21 4.8
AJ005083-1|CAB65469.1| 585|Tribolium castaneum signal receptor ... 21 4.8
DQ414247-1|ABD63009.2| 414|Tribolium castaneum paired protein. 21 8.4
AF017415-2|AAB70263.1| 284|Tribolium castaneum abdominal-A prot... 21 8.4
AF017415-1|AAB70262.1| 343|Tribolium castaneum abdominal-AII pr... 21 8.4
AF017414-2|AAB70261.1| 150|Tribolium castaneum abdominal-A prot... 21 8.4
AF017414-1|AAB70260.1| 209|Tribolium castaneum abdominal-AII pr... 21 8.4
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 21.4 bits (43), Expect = 4.8
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +2
Query: 8 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 118
+YAC + + V+ +RR + +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 21.4 bits (43), Expect = 4.8
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +2
Query: 8 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 118
+YAC + + V+ +RR + +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 21.4 bits (43), Expect = 4.8
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +2
Query: 8 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 118
+YAC + + V+ +RR + +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 21.4 bits (43), Expect = 4.8
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +2
Query: 8 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 118
+YAC + + V+ +RR + +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 21.4 bits (43), Expect = 4.8
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +2
Query: 8 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 118
+YAC + + V+ +RR + +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226
>AJ005083-1|CAB65469.1| 585|Tribolium castaneum signal receptor
protein protein.
Length = 585
Score = 21.4 bits (43), Expect = 4.8
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 307 HLKDASPVLDHAICKSYPIH 248
+L D+SP L+ A C+ + H
Sbjct: 63 NLCDSSPCLNGATCQDHTTH 82
>DQ414247-1|ABD63009.2| 414|Tribolium castaneum paired protein.
Length = 414
Score = 20.6 bits (41), Expect = 8.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 1 PVVICLSQRLSHACLS 48
P VI R+SH C+S
Sbjct: 73 PCVISRQLRVSHGCVS 88
>AF017415-2|AAB70263.1| 284|Tribolium castaneum abdominal-A
protein.
Length = 284
Score = 20.6 bits (41), Expect = 8.4
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -2
Query: 372 IPRYPW 355
IPRYPW
Sbjct: 130 IPRYPW 135
>AF017415-1|AAB70262.1| 343|Tribolium castaneum abdominal-AII
protein.
Length = 343
Score = 20.6 bits (41), Expect = 8.4
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -2
Query: 372 IPRYPW 355
IPRYPW
Sbjct: 189 IPRYPW 194
>AF017414-2|AAB70261.1| 150|Tribolium castaneum abdominal-A
protein.
Length = 150
Score = 20.6 bits (41), Expect = 8.4
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -2
Query: 372 IPRYPW 355
IPRYPW
Sbjct: 130 IPRYPW 135
>AF017414-1|AAB70260.1| 209|Tribolium castaneum abdominal-AII
protein.
Length = 209
Score = 20.6 bits (41), Expect = 8.4
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -2
Query: 372 IPRYPW 355
IPRYPW
Sbjct: 189 IPRYPW 194
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,189
Number of Sequences: 336
Number of extensions: 2496
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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