Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0353.Seq
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    30   0.23 
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    29   0.40 
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    27   2.1  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    26   3.7  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.5  

>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 286 VLDHAICKSYPIHQN*RLRTRGPPSIGFDLIKALIP 179
           ++D    K Y IH +  L  +  PS GF +I++L+P
Sbjct: 391 LIDQGYIKGYIIHASSTLVLKKDPSFGFSVIESLMP 426


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +1

Query: 226 ASEVVNFDESDNFCRSHGQVPATHLSNVCLINFRW*F---LRLPWLPRVTGNQGSIPXRX 396
           + E+++F E        G   +  L   C+IN  W     LRL +L +   NQ S   + 
Sbjct: 243 SKEIIDFLEKSKTLVELGMDSSCSLVAECMINETWPVDRALRLQFLIQQRNNQSSNEEQK 302

Query: 397 PEKRLP 414
            EKR+P
Sbjct: 303 QEKRVP 308


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 423 PWMW*PFLRXPXRNRTLIPRYPWQPW*SQKLPS 325
           P MW      P  N+ +   YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = -3

Query: 353 NHGSRRNYHRKLIRQTFERCVAGT*PCDLQKLSDSSKLTTSD 228
           N  SR+  ++ L R     C+ G  PC+L+ LSD+S LTT D
Sbjct: 70  NKPSRKALYQAL-RSLRLNCL-GDKPCELELLSDTS-LTTGD 108


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 75  NGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSD 179
           N  IY+ +F  ++S++ + + I  L   +RT++SD
Sbjct: 14  NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSD 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,116,399
Number of Sequences: 5004
Number of extensions: 40893
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)