Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0353.Seq
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0154 + 32029133-32029765                                         30   0.93 
03_06_0307 + 33027012-33027167,33028505-33028615,33028927-330290...    28   3.7  
03_04_0142 - 17656751-17657554                                         28   3.7  
02_05_0280 + 27435166-27435254,27436348-27436437,27436764-274368...    27   8.7  

>03_06_0154 + 32029133-32029765
          Length = 210

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 373 QGSIPXRXPEKRLPHPRKAASAQITHSRHGGGSD 474
           Q ++P R    RLP  RK ++ +    R GGG D
Sbjct: 129 QSNLPFRDAPVRLPTQRKVSNLRARRERDGGGGD 162


>03_06_0307 +
           33027012-33027167,33028505-33028615,33028927-33029065,
           33029215-33029323,33029422-33029425
          Length = 172

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = +2

Query: 212 RRRASRPKSLILMNRITFADRMVKYRRRIFQM 307
           R+RA+  K++ L N+I   +R+++ RR+I +M
Sbjct: 28  RKRAAAAKTVSLKNQIRSTERLLRKRRKIERM 59


>03_04_0142 - 17656751-17657554
          Length = 267

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 358 RVTGNQG-SIPXRXPEKRLPHPRKAASAQITHSRHG 462
           R +GN+G S P R P   LP P +  S  + H+ HG
Sbjct: 153 RASGNEGYSNPIRRP---LPPPVETQSPSVNHANHG 185


>02_05_0280 +
           27435166-27435254,27436348-27436437,27436764-27436866,
           27437318-27437377,27437745-27439148,27439227-27439328,
           27439424-27439609,27439695-27439820,27439905-27440000,
           27440509-27440574
          Length = 773

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +2

Query: 149 NTCNQNSDQ*WDECFY*IKTNRRR 220
           N+ N++SDQ   +C+Y +KTNR++
Sbjct: 741 NSLNRSSDQ-ISKCYYSLKTNRKQ 763


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,424,419
Number of Sequences: 37544
Number of extensions: 294962
Number of successful extensions: 802
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)