Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0353.Seq
(508 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 7e-04
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.008
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22) 32 0.31
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082) 32 0.31
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.41
SB_1429| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.41
SB_27873| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 27 6.7
SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24) 27 8.9
>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 44.8 bits (101), Expect = 4e-05
Identities = 23/46 (50%), Positives = 29/46 (63%)
Frame = -1
Query: 484 YIFGHYLHRAGSG*FARXLPSLDVVAVSQXPXPESNPDSPLPVATM 347
++F H LH + + + DVVAVSQ P PESNP+SP PV TM
Sbjct: 84 HVFVHRLHNKHAT-KPKPIKYWDVVAVSQAPSPESNPNSPSPVVTM 128
>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/27 (74%), Positives = 20/27 (74%)
Frame = +1
Query: 1 PVVICLSQRLSHACLSASRIKAIPRMA 81
PVVICLSQRLSHACLS S RMA
Sbjct: 135 PVVICLSQRLSHACLSISTCTVKLRMA 161
>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/27 (74%), Positives = 20/27 (74%)
Frame = +1
Query: 1 PVVICLSQRLSHACLSASRIKAIPRMA 81
PVVICLSQRLSHACLS S RMA
Sbjct: 111 PVVICLSQRLSHACLSISTRTVKLRMA 137
>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = -1
Query: 409 AVSQXPXPESNPDSPLPVATM 347
AVSQ P PESNP+SP PV TM
Sbjct: 52 AVSQAPSPESNPNSPSPVVTM 72
>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
Length = 1797
Score = 31.9 bits (69), Expect = 0.31
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 8 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 142
L CL D A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 447 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491
>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
Length = 1304
Score = 31.9 bits (69), Expect = 0.31
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 8 LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 142
L CL D A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 866 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 31.5 bits (68), Expect = 0.41
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -2
Query: 408 PFLRXPXRNRTLIPRYPW 355
PFLR P RNRTLI R+P+
Sbjct: 224 PFLRLPLRNRTLILRHPF 241
>SB_1429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 31.5 bits (68), Expect = 0.41
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3
Query: 288 GDASFKCLPYQLSMVVS 338
GD SFK LPYQLSM+++
Sbjct: 65 GDVSFKFLPYQLSMIIA 81
>SB_27873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +3
Query: 288 GDASFKCLPYQLSM 329
GD SFK LPYQLSM
Sbjct: 91 GDVSFKFLPYQLSM 104
>SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +3
Query: 288 GDASFKCLPYQLSM 329
GD SFK LPYQLSM
Sbjct: 685 GDVSFKFLPYQLSM 698
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 427 PSLDVVAVSQXPXPESNPDSPLP 359
P+ DV+A Q P P S D PLP
Sbjct: 75 PAEDVMAAHQEPKPTSAIDQPLP 97
>SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 66 DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSDG 182
D NG+I F + W + LE IH + TL DG
Sbjct: 263 DFGNGTISSFTGNITRFNVWTLYISLEFIHNMATLVEDG 301
>SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)
Length = 1064
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 206 TNRRRASRPKSLILMNRITFADRMVKYRRRIFQMS--ALSTFDGSFCD 343
T R+S +S L +R F+DR + R R+F++ L+ DG+F D
Sbjct: 926 TAAERSSAEESF-LSSRTVFSDRTLNRRSRLFKLHYINLNRRDGNFTD 972
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,253,633
Number of Sequences: 59808
Number of extensions: 316581
Number of successful extensions: 797
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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