Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0353.Seq
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07020.1 68415.m00803 protein kinase family protein contains ...    32   0.19 
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ...    28   3.1  
At4g38560.1 68417.m05459 expressed protein                             28   4.2  
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ...    28   4.2  
At5g12460.1 68418.m01464 fringe-related protein similarity to pr...    27   5.5  
At1g14270.1 68414.m01692 CAAX amino terminal protease family pro...    27   7.3  

>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 260 LSDSSKLTTSDARPSVDWF*SNKSTHPITGQSSD 159
           +SDS     S  RPS+DWF  N+S +  +  SS+
Sbjct: 221 VSDSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254


>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
           SP|P18708 Vesicular-fusion protein NSF
           (N-ethylmaleimide-sensitive fusion protein)
           (NEM-sensitive fusion protein) {Cricetulus griseus};
           contains Pfam profiles PF00004: ATPase AAA family,
           PF02359: Cell division protein 48 (CDC48) N-terminal
           domain; contains non-consensus AT-AC splice sites at
           intron 2
          Length = 742

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +1

Query: 199 DQNQSTEGLASE--VVNFDESDNFCRSHG 279
           +Q+Q T G ASE  V+ FDE D  C+S G
Sbjct: 307 EQDQRTLGDASELHVIIFDEIDAICKSRG 335


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 6   SYMLVSKIKPCMSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILEL 149
           SY + + +   + +     GD A+GS  Q    +SYS+  +  V+LEL
Sbjct: 341 SYKVRASVSSTLQKILDKHGDIASGSKLQSLRTKSYSLETLAAVVLEL 388


>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 989

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 474 VTTSTVPGVGNLRAXCLPW 418
           V+ ++VPGVGN +   LPW
Sbjct: 330 VSRTSVPGVGNSKGVLLPW 348


>At5g12460.1 68418.m01464 fringe-related protein similarity to
           predicted proteins + similar to hypothetical protein
           GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
           Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 415

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 356 GNHGSRRNYHRKLIRQTFERCVAGT*PCDLQKLSDSSKL 240
           GNH SR     ++I  T  + V G   CD+Q ++ +  L
Sbjct: 363 GNHSSRNITQVRVIATTMHKMVEGIECCDVQNVNSTEIL 401


>At1g14270.1 68414.m01692 CAAX amino terminal protease family
           protein contains Pfam profile PF02517: CAAX amino
           terminal protease family
          Length = 353

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 4   VVICLSQRLSHACLSASRIKAIPRMAQY 87
           ++ CLSQ  S  CLS SR   +P+   Y
Sbjct: 18  IISCLSQSSSLLCLSDSRRLILPKTCTY 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,242,978
Number of Sequences: 28952
Number of extensions: 223596
Number of successful extensions: 532
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)