Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0352.Seq
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    29   0.44 
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    27   1.0  
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.4  
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo...    25   5.4  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    25   5.4  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    24   9.4  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    24   9.4  

>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -3

Query: 402 FLXYEEXKQDLXGTIKRIANFFNKTYTDE---QISGLCKHVHI 283
           FL YE+ KQD+   + R+    +KTY  E   Q + L + +H+
Sbjct: 433 FLSYEDPKQDILIGLLRLRQCSDKTYRPEFTSQPTSLVRELHV 475


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +2

Query: 161 IEVIAPATDFSFP--YKWFFSWY*TIDFR*KVHMTESLFLKLS 283
           +E IA + D++F    +W+  W+ +++FR  + +   L LK+S
Sbjct: 677 VEPIAHSVDYTFKPTVEWWNKWWPSLNFRTMLDIFTDLSLKIS 719


>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 86  ISWKLNTSFFHFFGHPSFALLSHLLIEVIA-PATDFSFPYKWF 211
           I +KLN+    F  +PS    S L I+ IA P T F   +K++
Sbjct: 84  IDFKLNSLCCSFTCYPSILFASSLPIQFIALPPTVFLLFFKFY 126


>SPBC19F8.02 |||nuclear distribution protein NUDC
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -3

Query: 429 DLXNHPNMLFLXYEEXKQDLXGTIKRIANFFNKTYTDEQISGLCKHVHIDN 277
           D+ NH   + +   E K  L G +++  N    T+T E+   L  H+   N
Sbjct: 38  DMSNHDLKIQINVPERKVLLSGPLEKQINLDESTWTVEEQERLVIHLEKSN 88


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 61  NSLYFTITDKLETEYQFLPLFWPSIVRTP 147
           N L F     L+  +QFL L W   VR P
Sbjct: 92  NRLQFLFLGPLKVLHQFLALNWALFVRKP 120


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 175 RDYFDEEMTKECERWMAKKVEETGIQFPT 89
           +++F   +T +CE  M K +  T  +FP+
Sbjct: 572 QEFFSLAITNKCEGLMVKVLNGTNSKFPS 600


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 33  LKGRTNFVV*FALFHDYG 86
           L+ +TNF   F L+HD+G
Sbjct: 254 LENKTNFKSEFILYHDWG 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,792,309
Number of Sequences: 5004
Number of extensions: 34300
Number of successful extensions: 86
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)