Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0352.Seq
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               48   4e-06
SB_39059| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   6e-06
SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)             46   2e-05
SB_43518| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   1e-04
SB_12928| Best HMM Match : Sulfotransfer_1 (HMM E-Value=9.3e-10)       33   0.11 
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_25904| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_27123| Best HMM Match : FecCD (HMM E-Value=0.12)                    28   4.1  
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)       28   4.1  
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   27   7.2  
SB_47947| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 20/62 (32%), Positives = 37/62 (59%)
 Frame = -3

Query: 447  HVKEAWDLXNHPNMLFLXYEEXKQDLXGTIKRIANFFNKTYTDEQISGLCKHVHIDNFRN 268
            HV   W     PN+LFL YE+ K+DL  T+++IA+F  ++ ++E I+ + +    D  ++
Sbjct: 2549 HVLGWWKHHGDPNILFLKYEDMKKDLPSTVRQIASFVGRSPSEEVIARIVRQTTFDAMKD 2608

Query: 267  ND 262
             +
Sbjct: 2609 GE 2610



 Score = 40.3 bits (90), Expect = 7e-04
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -2

Query: 259  GHVNFLSKVDGLIPGEEPFIRKGKVGGWRDYFDEEMTKECERWMAKKVEETGIQFPTYP 83
            G   F  K     PG + FIRKG+VG WR+YF +E ++  +    + +  +G+Q    P
Sbjct: 2609 GEQFFQRKRPDFKPGFK-FIRKGEVGDWRNYFTDEQSRRVDEMYTRMMAGSGLQLEFEP 2666


>SB_39059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 47.2 bits (107), Expect = 6e-06
 Identities = 20/62 (32%), Positives = 37/62 (59%)
 Frame = -3

Query: 447 HVKEAWDLXNHPNMLFLXYEEXKQDLXGTIKRIANFFNKTYTDEQISGLCKHVHIDNFRN 268
           HV   W     PN+LFL YE+ K+DL  T+++IA+F  ++ ++E I+ + +    D  ++
Sbjct: 64  HVLGWWKHHEDPNILFLKYEDMKKDLPRTVRQIASFVGRSPSEEVIARIVRQTTFDAMKD 123

Query: 267 ND 262
            +
Sbjct: 124 GE 125



 Score = 40.3 bits (90), Expect = 7e-04
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 205 FIRKGKVGGWRDYFDEEMTKECERWMAKKVEETGIQFPTYP 83
           FIRKG+VG WR+YF +E  +  +    + +  +G+Q    P
Sbjct: 141 FIRKGEVGDWRNYFTDEQNRRVDEMYTRMMTSSGLQLEFEP 181


>SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)
          Length = 922

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = -3

Query: 447 HVKEAWDLXNHPNMLFLXYEEXKQDLXGTIKRIANFFNKTYTDEQISGLCKHVHIDNFRN 268
           HV + W+  + PN+L L YE+ K+D  G +  IA F  +  T+EQ+  +      +  ++
Sbjct: 174 HVLDWWEHRDDPNILLLKYEDMKKDHRGAVAAIAKFLGRALTEEQLDRIVSQTSFEFMKS 233

Query: 267 ND 262
            +
Sbjct: 234 QE 235



 Score = 31.9 bits (69), Expect = 0.25
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 220 PGEEPFIRKGKVGGWRDYFDEEMTKECERWMAKKVEETGI 101
           P E   IRKG VG WR++F  E  +  +     ++   GI
Sbjct: 246 PNEPELIRKGVVGDWRNHFTAEQNQMFDELYETRMSGKGI 285



 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 447 HVKEAWDLXNHPNMLFLXYEEXKQ 376
           HV + W+  + PN+L L YE+ K+
Sbjct: 548 HVLDWWEHRDDPNILLLKYEDMKK 571


>SB_43518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -2

Query: 229 GLIPGEEPFIRKGKVGGWRDYFDEEMTKECERWMAKKVEETGIQF 95
           G     E F+RKGKVG W  YF  E ++  +    +++ ETG++F
Sbjct: 44  GFYKETEKFMRKGKVGDWVSYFSREQSERLDAIYNERIRETGLEF 88


>SB_12928| Best HMM Match : Sulfotransfer_1 (HMM E-Value=9.3e-10)
          Length = 221

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 193 GKVGGWRDYFDEEMTKECERWMAKKVEETG 104
           GKVG W+D+F EE  +  +R   +++  TG
Sbjct: 185 GKVGSWKDFFTEEQNRRFDRKFKQEMAGTG 214


>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1712

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 17   YSEEIIERKNKFCGLIRSISRLRISWKLNTSFFH 118
            +  E IER NK  GL R+  R R+ + ++ + FH
Sbjct: 958  WETESIERANKTTGLNRTRIRSRVDYVMDITVFH 991


>SB_25904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -2

Query: 232 DGLIPGEEPFIRKGKVGGWRDYFDEEMTKECERWMAKKVEE 110
           +GL+        K  + GW+  F+ + T  C +W+ + V E
Sbjct: 3   EGLVKSSRKTPTKFDLDGWQPSFEADGTPSCIKWIIEDVAE 43


>SB_27123| Best HMM Match : FecCD (HMM E-Value=0.12)
          Length = 587

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -3

Query: 408 MLFLXYEEXKQD----LXGTIKRIANFFNKTYTDEQISGLCKHVHI 283
           MLF  Y+    +    L G+   +A FFNK +      GLCK V++
Sbjct: 529 MLFYQYDGDDDEEYGVLTGSFLLMAEFFNKLFLFLVFVGLCKFVYL 574


>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
          Length = 976

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 238 KVDGLIPGEEPFIRKGKVGGWRDYFDEEMTKEC-ERWMAKKVEETG 104
           ++DG IP  E FIR+  VG  + +F EE    C ER   +  E  G
Sbjct: 140 EMDGNIPSGESFIRQFVVG--QQFFKEEFGMMCKERRHDRNAEANG 183


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 2   VSILFYSEEIIERKNKFCGLIRSISRLRISWKLNTSFFHF 121
           ++IL    + +E K  FCG   SI   + + +LNTS  +F
Sbjct: 560 IAILTKELQAMENKTGFCGANASIFESKNTIELNTSIANF 599


>SB_47947| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 349 YAFDC-AGKVLFXFFIXEKQHVWMIX*IPC 435
           YA+ C +G+VLF + +   +H W I    C
Sbjct: 9   YAYQCKSGEVLFYYNVKSGEHRWAIHFCAC 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,820,668
Number of Sequences: 59808
Number of extensions: 232044
Number of successful extensions: 554
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)