Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0352.Seq
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U70844-7|AAB09097.1|  686|Caenorhabditis elegans Adam (disintegr...    27   4.8  
AF026215-2|AAB71324.2|  533|Caenorhabditis elegans Udp-glucurono...    27   4.8  
AL132858-6|CAB60475.1|  412|Caenorhabditis elegans Hypothetical ...    27   6.3  
Z35400-1|CAA84584.1|  532|Caenorhabditis elegans putative transp...    27   8.3  
U12433-1|AAA20582.1|  532|Caenorhabditis elegans putative transp...    27   8.3  

>Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical
           protein W08D2.7 protein.
          Length = 1026

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +2

Query: 44  NKFCGLIRSISRLRISWKLNTSFFHFFGHPSFALLSHLLIEVIAPATDFSFPYK 205
           N    L+R +  + +SW +N SF  F  +     +    ++V      F+FP++
Sbjct: 555 NMVLNLMR-VEGMAVSWIINNSFHQFQSYAKIPEIDKKCVQVERKIASFNFPWE 607


>U70844-7|AAB09097.1|  686|Caenorhabditis elegans Adam (disintegrin
           plus metalloprotease)family protein 4 protein.
          Length = 686

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -2

Query: 220 PGEEPFIRKGKVGGWRDYFDEEMTKECERWMAKKVEE 110
           P     IR   +G W   F EEMT  C   + +  EE
Sbjct: 423 PCSRKLIRDVLIGKWESCFQEEMTSFCGNGIVEDGEE 459



 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 62  IRSISRLRISWKL--NTSFFHFFGHPSFALLSHLLIEVIAPATDFSFPYKW 208
           + ++ R R + KL  + SF+  FG  +  +++  L+ +IA   +   P  W
Sbjct: 181 VLNVKRNRCTLKLVADYSFYSIFGKNNTGIVTKFLVNMIARVNEIYTPINW 231


>AF026215-2|AAB71324.2|  533|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein36 protein.
          Length = 533

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 113 FHFFGHPSFALLSHLLIEVIAPATDFSFPY 202
           F  F  P++ +L +L I+   PAT  +F Y
Sbjct: 149 FEHFVEPAYLVLDYLEIQKFIPATSLAFDY 178


>AL132858-6|CAB60475.1|  412|Caenorhabditis elegans Hypothetical
           protein Y113G7A.11 protein.
          Length = 412

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 411 NMLFLXYEEXKQDLXGTIKRIANF 340
           N+LFL YE+  QDL   + +I  F
Sbjct: 227 NVLFLKYEDMFQDLENAVYKIGQF 250



 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 205 FIRKGKVGGWRDYFDEEMTKECERWMAKKVEET 107
           FIRKG    W++YF  E +   +   A K   T
Sbjct: 295 FIRKGGSRDWKNYFTREQSDRIDSIFAAKFAGT 327


>Z35400-1|CAA84584.1|  532|Caenorhabditis elegans putative
           transposase protein.
          Length = 532

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 141 ANDGWPKKWKK 109
           A+DGW KKWKK
Sbjct: 196 ASDGWLKKWKK 206


>U12433-1|AAA20582.1|  532|Caenorhabditis elegans putative
           transposase protein.
          Length = 532

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 141 ANDGWPKKWKK 109
           A+DGW KKWKK
Sbjct: 196 ASDGWLKKWKK 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,801,254
Number of Sequences: 27780
Number of extensions: 189143
Number of successful extensions: 515
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)