Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0352.Seq
(449 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g03760.1 68415.m00336 steroid sulfotransferase, putative stro... 42 1e-04
At3g45080.1 68416.m04860 sulfotransferase family protein similar... 38 0.003
At3g45070.1 68416.m04858 sulfotransferase family protein similar... 38 0.003
At2g27570.1 68415.m03340 sulfotransferase family protein similar... 38 0.003
At1g13430.1 68414.m01568 sulfotransferase family protein similar... 36 0.017
At5g07000.1 68418.m00793 sulfotransferase family protein similar... 35 0.029
At2g14920.1 68415.m01697 sulfotransferase family protein similar... 35 0.029
At1g74100.1 68414.m08582 sulfotransferase family protein similar... 35 0.029
At1g74090.1 68414.m08581 sulfotransferase family protein similar... 35 0.029
At1g18590.1 68414.m02318 sulfotransferase family protein similar... 35 0.029
At1g28170.1 68414.m03458 sulfotransferase family protein similar... 34 0.039
At1g13420.1 68414.m01566 sulfotransferase family protein similar... 34 0.051
At5g07010.1 68418.m00794 sulfotransferase family protein similar... 33 0.089
At4g26280.1 68417.m03781 sulfotransferase family protein similar... 33 0.12
At5g43690.1 68418.m05340 sulfotransferase family protein similar... 32 0.16
At2g03770.1 68415.m00337 sulfotransferase family protein similar... 32 0.16
At2g03750.1 68415.m00335 sulfotransferase family protein similar... 31 0.36
At4g26080.1 68417.m03755 protein phosphatase 2C ABI1 / PP2C ABI1... 29 1.1
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun... 29 1.1
At5g43190.1 68418.m05276 F-box family protein (FBX6) contains si... 29 1.9
At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit (... 29 1.9
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun... 29 1.9
At5g27730.1 68418.m03326 expressed protein 27 5.9
At4g02460.1 68417.m00333 DNA mismatch repair protein, putative s... 27 5.9
At3g54070.1 68416.m05978 ankyrin repeat family protein contains ... 27 7.7
At2g27460.1 68415.m03319 sec23/sec24 transport family protein we... 27 7.7
At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal hydrolase-r... 27 7.7
>At2g03760.1 68415.m00336 steroid sulfotransferase, putative strong
similarity to steroid sulfotransferases from [Brassica
napus] GI:3420008, GI:3420004, GI:3420006; contains Pfam
profile PF00685: Sulfotransferase domain
Length = 326
Score = 42.3 bits (95), Expect = 1e-04
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = -2
Query: 205 FIRKGKVGGWRDYFDEEMTKECERWMAKKVEETGIQF 95
F RKG++GGWRD E + +E +R + +K + +G++F
Sbjct: 288 FFRKGEIGGWRDTLSESLAEEIDRTIEEKFKGSGLKF 324
Score = 32.7 bits (71), Expect = 0.12
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Frame = -3
Query: 447 HVKEAWDLXN-HPN-MLFLXYEEXKQDLXGTIKRIANFFNKTYTDE----QISGLCKHVH 286
H+ E W +PN +LF+ YEE K+ +KRIA F + +E +I LC
Sbjct: 208 HILEYWYASRENPNKVLFVTYEELKKQTEVEMKRIAEFLECGFIEEEEVREIVKLCSFES 267
Query: 285 IDNFRNN 265
+ N N
Sbjct: 268 LSNLEVN 274
>At3g45080.1 68416.m04860 sulfotransferase family protein similar to
steroid sulfotransferase 3 [Brassica napus] GI:3420008,
steroid sulfotransferase 1 [Brassica napus] GI:3420004;
contains Pfam profile PF00685: Sulfotransferase domain
Length = 329
Score = 37.9 bits (84), Expect = 0.003
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = -2
Query: 253 VNFLSKVDGLIPGEEPFIRKGKVGGWRDYFDEEMTKECERWMAKKVEETGIQF 95
+N K+ + F RKG+VG W++Y EM + + + +K++ +G++F
Sbjct: 277 INKTGKLHSTGRENKTFFRKGEVGDWKNYLTPEMENKIDMIIQEKLQNSGLKF 329
Score = 33.9 bits (74), Expect = 0.051
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = -3
Query: 447 HVKEAW--DLXNHPNMLFLXYEEXKQDLXGTIKRIANFFNKTYT-DEQISGLCKH-VHID 280
HV W L + ++LF+ +EE K++ IKR+A F +T +E+ SGL + +
Sbjct: 208 HVLSYWRGSLEDPNHVLFMKFEEMKEEPREQIKRLAEFLGCLFTKEEEESGLVDEIIDLC 267
Query: 279 NFRNNDSV 256
+ RN S+
Sbjct: 268 SLRNLSSL 275
>At3g45070.1 68416.m04858 sulfotransferase family protein similar to
steroid sulfotransferase 3 [Brassica napus] GI:3420008,
steroid sulfotransferase 1 [Brassica napus] GI:3420004;
contains Pfam profile PF00685: Sulfotransferase domain
Length = 323
Score = 37.9 bits (84), Expect = 0.003
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -2
Query: 244 LSKVDGLIPGEEP--FIRKGKVGGWRDYFDEEMTKECERWMAKKVEETGIQF 95
++K L G E F RKG+VG W++Y EM + + + +K++ +G++F
Sbjct: 272 INKTGKLNSGRENKMFFRKGEVGDWKNYLTPEMENKIDMIIQEKLQNSGLKF 323
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -3
Query: 447 HVKEAW--DLXNHPNMLFLXYEEXKQDLXGTIKRIANFFNKTYTDEQ 313
HV W L + ++LF+ +EE K + IK+ A F +T E+
Sbjct: 203 HVLSYWRGSLEDPNHVLFMKFEEMKAEPRDQIKKFAEFLGCPFTKEE 249
>At2g27570.1 68415.m03340 sulfotransferase family protein similar to
steroid sulfotransferase from [Brassica napus]
GI:3420008, GI:3420006; contains Pfam profile PF00685:
Sulfotransferase domain
Length = 273
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -2
Query: 244 LSKVDGLIPGEE--PFIRKGKVGGWRDYFDEEMTKECERWMAKKVEETGIQF 95
++K L G + F RKG+VG W++Y EM + + + +K++ +G++F
Sbjct: 222 INKTGKLCEGRDNKTFFRKGEVGDWKNYLTPEMENKIDMIIQEKLQNSGLKF 273
>At1g13430.1 68414.m01568 sulfotransferase family protein similar to
steroid sulfotransferase 3 GI:3420008 from (Brassica
napus); contains Pfam profile PF00685: Sulfotransferase
domain
Length = 351
Score = 35.5 bits (78), Expect = 0.017
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = -2
Query: 205 FIRKGKVGGWRDYFDEEMTKECERWMAKKVEETGIQF 95
+ RKG+VG W+ Y EM + + + +K++ +G++F
Sbjct: 315 YFRKGQVGDWKSYMTSEMVNKIDMIVEEKLKGSGLKF 351
Score = 31.9 bits (69), Expect = 0.21
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 447 HVKEAW--DLXNHPNMLFLXYEEXKQDLXGTIKRIANFFNKTYTDEQ 313
H + W L + + LF+ YEE K + +KR+A F + +T E+
Sbjct: 232 HAQSYWRGSLEDPKHFLFMRYEELKAEPRTQVKRLAEFLDCPFTKEE 278
>At5g07000.1 68418.m00793 sulfotransferase family protein similar to
steroid sulfotransferase 3 [Brassica napus] GI:3420008,
steroid sulfotransferase 1 [Brassica napus] GI:3420004;
contains Pfam profile PF00685: Sulfotransferase domain
Length = 347
Score = 34.7 bits (76), Expect = 0.029
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -3
Query: 447 HVKEAW--DLXNHPNMLFLXYEEXKQDLXGTIKRIANFFNKTYTDEQ 313
H+ W L +LFL YE+ K+D+ +K++A+F +T+E+
Sbjct: 224 HMLGYWRESLKRPEKVLFLKYEDLKEDIETNLKKLASFLGLPFTEEE 270
>At2g14920.1 68415.m01697 sulfotransferase family protein similar to
steroid sulfotransferase from [Brassica napus]
GI:3420008, GI:3420004; contains Pfam profile PF00685:
Sulfotransferase domain
Length = 333
Score = 34.7 bits (76), Expect = 0.029
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = -2
Query: 205 FIRKGKVGGWRDYFDEEMTKECERWMAKKVEETGIQF 95
+ RKG+VG W+ Y EM + + + +K++ +G++F
Sbjct: 297 YFRKGQVGDWKSYMTPEMVDKIDMIIEEKLKGSGLKF 333
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -3
Query: 447 HVKEAW--DLXNHPNMLFLXYEEXKQDLXGTIKRIANFFNKTYTDEQ 313
H W L + + LF+ YE+ K + +KR+A F + +T E+
Sbjct: 214 HALSYWRGSLEDPKHFLFMRYEDLKAEPRTQVKRLAEFLDCPFTKEE 260
>At1g74100.1 68414.m08582 sulfotransferase family protein similar to
SP|P52837 Flavonol 4'-sulfotransferase (EC 2.8.2.-)
(F4-ST) {Flaveria chloraefolia}; contains Pfam profile
PF00685: Sulfotransferase domain
Length = 338
Score = 34.7 bits (76), Expect = 0.029
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 205 FIRKGKVGGWRDYFDEEMTKECERWMAKKVEETGI 101
+ RKGKVG W +Y EM + + +K ++TG+
Sbjct: 299 YFRKGKVGDWANYLTPEMAARIDGLVEEKFKDTGL 333
Score = 29.9 bits (64), Expect = 0.83
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 447 HVKEAWDLX--NHPNMLFLXYEEXKQDLXGTIKRIANFFNKTYTDEQ 313
HV W N +LFL YE + + +KR+A F +TDE+
Sbjct: 211 HVLGYWKAYQENPDRILFLRYETMRANPLPFVKRLAEFMGYGFTDEE 257
>At1g74090.1 68414.m08581 sulfotransferase family protein similar to
SP|P52837 Flavonol 4'-sulfotransferase (EC 2.8.2.-)
(F4-ST) {Flaveria chloraefolia}; contains Pfam profile
PF00685: Sulfotransferase domain
Length = 350
Score = 34.7 bits (76), Expect = 0.029
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 205 FIRKGKVGGWRDYFDEEMTKECERWMAKKVEETGI 101
+ RKGKVG W +Y EM + M +K + TG+
Sbjct: 311 YFRKGKVGDWSNYLTPEMAARIDGLMEEKFKGTGL 345
>At1g18590.1 68414.m02318 sulfotransferase family protein similar to
SP|P52837 Flavonol 4'-sulfotransferase (EC 2.8.2.-)
(F4-ST) {Flaveria chloraefolia}; contains Pfam profile
PF00685: Sulfotransferase domain
Length = 346
Score = 34.7 bits (76), Expect = 0.029
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 205 FIRKGKVGGWRDYFDEEMTKECERWMAKKVEETG 104
+ RKGKVG W++Y EM + M +K + TG
Sbjct: 307 YFRKGKVGDWQNYLTPEMVARIDGLMEEKFKGTG 340
Score = 30.3 bits (65), Expect = 0.63
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -3
Query: 447 HVKEAWDLX--NHPNMLFLXYEEXKQDLXGTIKRIANFFNKTYTDEQISG 304
HV W N +LFL YE + D +KR+A F +T E+ G
Sbjct: 219 HVLGYWKAYQANPDQILFLKYETMRADPLPYVKRLAEFMGYGFTKEEEEG 268
>At1g28170.1 68414.m03458 sulfotransferase family protein similar to
steroid sulfotransferase 3 GI:3420008 from [Brassica
napus]; contains Pfam profile PF00685: Sulfotransferase
domain
Length = 326
Score = 34.3 bits (75), Expect = 0.039
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 447 HVKEAW--DLXNHPNMLFLXYEEXKQDLXGTIKRIANFFNKTYTDEQ 313
HV W L + N+LFL YEE K + +KR+A F + +T E+
Sbjct: 206 HVLNYWRASLEDSKNVLFLKYEELKTEPRVQLKRLAEFLDCPFTVEE 252
>At1g13420.1 68414.m01566 sulfotransferase family protein similar to
steroid sulfotransferase 1 GI:3420004 from (Brassica
napus); contains Pfam profile PF00685: Sulfotransferase
domain
Length = 331
Score = 33.9 bits (74), Expect = 0.051
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -2
Query: 205 FIRKGKVGGWRDYFDEEMTKECERWMAKKVEETGIQ 98
F RKG+VG W+ Y EM + + + +K++ +G++
Sbjct: 295 FFRKGEVGDWKSYMTPEMENKIDMIVEEKLQGSGLK 330
Score = 32.7 bits (71), Expect = 0.12
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -3
Query: 426 LXNHPNMLFLXYEEXKQDLXGTIKRIANFFNKTYT--DEQISGLCKHVHIDNFRN 268
L + ++LFL YEE K + IKR+A F + +T +E G+ K + + + RN
Sbjct: 220 LEDPKHVLFLRYEELKTEPRVQIKRLAEFLDCPFTKEEEDSGGVDKILELCSLRN 274
>At5g07010.1 68418.m00794 sulfotransferase family protein similar to
steroid sulfotransferase 3 [Brassica napus] GI:3420008,
steroid sulfotransferase 1 [Brassica napus] GI:3420004;
contains Pfam profile PF00685: Sulfotransferase domain
Length = 359
Score = 33.1 bits (72), Expect = 0.089
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -3
Query: 447 HVKEAW--DLXNHPNMLFLXYEEXKQDLXGTIKRIANFFNKTYTDEQ 313
H+ W L + FL YE+ K D+ +KR+A F +T+E+
Sbjct: 236 HMLGYWRESLKRPEKVFFLRYEDLKDDIETNLKRLATFLELPFTEEE 282
>At4g26280.1 68417.m03781 sulfotransferase family protein similar to
steroid sulfotransferase 3 [Brassica napus] GI:3420008;
contains Pfam profile PF00685: Sulfotransferase domain
Length = 314
Score = 32.7 bits (71), Expect = 0.12
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Frame = -3
Query: 447 HVKEAW--DLXNHPNMLFLXYEEXKQDLXGTIKRIANFFNKTYT--DEQISGLCKHVHID 280
H+ W L +LF+ Y+E K D G +K++A F ++ +E+ L K + +
Sbjct: 189 HILSYWKASLEKPKQVLFMRYDEIKTDPHGQLKKLAEFLGCPFSKEEEKNGSLNKILEMC 248
Query: 279 NFRNNDSVM*TFYRKSMV*YQEKNH 205
+ N S+ KS+ + KNH
Sbjct: 249 SLPNLSSLEVNKTGKSINGIEYKNH 273
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -2
Query: 199 RKGKVGGWRDYFDEEMTKECERWMAKKVEE 110
RKG VG W+++ EM + + M +K+++
Sbjct: 275 RKGIVGDWKNHLTPEMGSKIDMIMKEKLKD 304
>At5g43690.1 68418.m05340 sulfotransferase family protein similar to
steroid sulfotransferase 3 [Brassica napus] GI:3420008,
steroid sulfotransferase 1 [Brassica napus] GI:3420004;
contains Pfam profile PF00685: Sulfotransferase domain
Length = 331
Score = 32.3 bits (70), Expect = 0.16
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -3
Query: 447 HVKEAW--DLXNHPNMLFLXYEEXKQDLXGTIKRIANFFNKTYTDEQ 313
H W L N ++LF+ YEE K + +KR+A F +T E+
Sbjct: 211 HALSYWRGSLENPKHVLFMRYEEMKTEPCVQVKRLAEFLGFPFTKEE 257
Score = 30.3 bits (65), Expect = 0.63
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = -2
Query: 205 FIRKGKVGGWRDYFDEEMTKECERWMAKKVEETGIQF 95
+ RKG+VG W+++ EM + + + +K++ + ++F
Sbjct: 295 YFRKGEVGDWKNHLTPEMENKIDMIIEEKLKGSDLKF 331
>At2g03770.1 68415.m00337 sulfotransferase family protein similar to
steroid sulfotransferase 3 [Brassica napus] GI:3420008;
contains Pfam profile PF00685: Sulfotransferase domain
Length = 324
Score = 32.3 bits (70), Expect = 0.16
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -3
Query: 447 HVKEAW--DLXNHPNMLFLXYEEXKQDLXGTIKRIANFFNKTYTDEQI 310
HV + W N ++F+ YEE ++ + RIA F ++T+E+I
Sbjct: 202 HVLQYWKESRENPKKVMFVMYEEMREQPQEWVMRIAEFLGYSFTEEEI 249
Score = 31.9 bits (69), Expect = 0.21
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -2
Query: 205 FIRKGKVGGWRDYFDEEMTKECERWMAKKVEETGIQF 95
F RKG++GGWRD + +E ++ +K+ + +F
Sbjct: 286 FFRKGEIGGWRDTLTPLLAEEIDKTTKEKLIGSDFRF 322
>At2g03750.1 68415.m00335 sulfotransferase family protein similar to
similar to steroid sulfotransferase 3 [Brassica napus]
GI:3420008, steroid sulfotransferase 1 [Brassica napus]
GI:3420004; contains Pfam profile PF00685:
Sulfotransferase domain
Length = 351
Score = 31.1 bits (67), Expect = 0.36
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -3
Query: 447 HVKEAW--DLXNHPNMLFLXYEEXKQDLXGTIKRIANFFNKTYTDEQ 313
HV W L N+LF+ YEE ++ +KR+A F +T E+
Sbjct: 230 HVLSYWKGSLEAKENVLFMKYEEIIEEPRVQVKRLAEFLECPFTKEE 276
Score = 30.7 bits (66), Expect = 0.48
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = -2
Query: 205 FIRKGKVGGWRDYFDEEMTKECERWMAKKVEETGIQF 95
F RKG+VG W+++ +M K + + ++ ++G+ F
Sbjct: 314 FFRKGEVGDWKNHLTPQMAKTFDEIIDYRLGDSGLIF 350
>At4g26080.1 68417.m03755 protein phosphatase 2C ABI1 / PP2C ABI1 /
abscisic acid-insensitive 1 (ABI1) nearly identical to
SP|P49597 Protein phosphatase 2C ABI1 (EC 3.1.3.16)
(PP2C) (Abscisic acid- insensitive 1) {Arabidopsis
thaliana}
Length = 434
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 135 DGWPKKWKKLVFSFQLIRNREIERIKPQ 52
D W +KWKK +F+ L + EIE + P+
Sbjct: 211 DTWLEKWKKALFNSFLRVDSEIESVAPE 238
>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 196 KGKVGGWRDYFDEEMTKECERWMAKKVEETG 104
KG+V WRDY + + ER+ K +E+ G
Sbjct: 14 KGRVLVWRDYRGDVSAAQAERFFTKLIEKEG 44
>At5g43190.1 68418.m05276 F-box family protein (FBX6) contains
similarity to unusual floral organs (UFO) GI:4376159
from [Arabidopsis thaliana]
Length = 403
Score = 28.7 bits (61), Expect = 1.9
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 62 IRSISRLRISWKLNTSFF--HFFGHPSFALLSH 154
+RSISR S L+ SF H F PSF LLSH
Sbjct: 71 LRSISRHLRSLILSPSFISDHSFSLPSFLLLSH 103
>At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit
(IRX1) nearly identical to gi:12836997
Length = 985
Score = 28.7 bits (61), Expect = 1.9
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -2
Query: 256 HVNFLSKVDGLIPGE--EPFIRKGKVGGWRDYFDEEMTKECERWMAKKVEETGIQFPT 89
H++ +S +D + E P I K +V W+D D++ K+ + A K E+ Q PT
Sbjct: 94 HISTVSTIDSELNDEYGNP-IWKNRVESWKDKKDKKSKKKKKDPKATKAEQHEAQIPT 150
>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 196 KGKVGGWRDYFDEEMTKECERWMAKKVEETG 104
KG+V WRDY + + ER+ K +E G
Sbjct: 14 KGRVLVWRDYRGDVTAAQAERFFTKLIETEG 44
>At5g27730.1 68418.m03326 expressed protein
Length = 472
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 52 LWFNSLYFTITDKLETEYQFLPLFW 126
L F+SLY ++ D LE ++ FLPL W
Sbjct: 368 LVFSSLY-SLVDILEWKHMFLPLKW 391
>At4g02460.1 68417.m00333 DNA mismatch repair protein, putative
similar to SP|P54278 PMS1 protein homolog 2 (DNA
mismatch repair protein PMS2) {Homo sapiens}; contains
Pfam profiles PF02518: ATPase, histidine kinase-, DNA
gyrase B-, and HSP90-like domain protein, PF01119: DNA
mismatch repair protein, C-terminal domain
Length = 923
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 126 PKKWKKLVFSFQLIRNREIERI 61
PK + L FSFQ +R R +ER+
Sbjct: 623 PKMFSTLEFSFQNLRTRRLERL 644
>At3g54070.1 68416.m05978 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 574
Score = 26.6 bits (56), Expect = 7.7
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 140 ALLSHLLIEVIAPATDFSFPYKWFFSWY*TIDFR*KVHMTESLFL 274
A LS +LI +A T +F Y +F W+ T+ V+++ LFL
Sbjct: 523 ASLSLVLISCLASLTALTFAYLYFHLWFNTLR---SVYISMFLFL 564
>At2g27460.1 68415.m03319 sec23/sec24 transport family protein weak
similarity to SP|P53992 Protein transport protein Sec24C
(SEC24-related protein C) {Homo sapiens}; contains Pfam
domains PF04811: Sec23/Sec24 trunk domain, PF04815:
Sec23/Sec24 helical domain and PF04810: Sec23/Sec24 zinc
finger
Length = 745
Score = 26.6 bits (56), Expect = 7.7
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +2
Query: 71 ISRLRIS--WKLNTSFFHFFGHPSFALLSHLLI--EVIAPATDFSFPYKWFFS 217
+ RLR S +K SF HFF P + L H++ A DF F FS
Sbjct: 383 VLRLRTSTEFKPGNSFGHFFPDPQYENLQHIICCDSYATYAYDFEFADNTGFS 435
>At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1136
Score = 26.6 bits (56), Expect = 7.7
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = -1
Query: 254 CELFIESRWSNTRRRTIYKERKSRWLARLLR*GD---D*GVRTMDGQKSGRNWYSV 96
C + +RW N R ++ E S W + ++ GD + ++ G+ G NW SV
Sbjct: 1059 CLAYENNRWVNLGRESLAGEDVSNWKSEVIFFGDFKVNLRQESLSGEDDG-NWKSV 1113
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,105,788
Number of Sequences: 28952
Number of extensions: 171806
Number of successful extensions: 469
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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