Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0350.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   4.1  
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...    26   5.4  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   7.1  

>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/53 (20%), Positives = 26/53 (49%)
 Frame = -3

Query: 514 IFNSIKSLRREKVKCFLPKMDIKTNIDMADLSQKMNVTKMFDPQSNDFEGILL 356
           +FNS K L  EK+   L  + ++ +I+   +S    +  ++  +  D   +++
Sbjct: 105 LFNSEKPLSPEKISTMLQHLQMRLSIEQQCVSGIEKIMSLYSKEQKDKTDVII 157


>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 486 RLSDLMLLKIHLNFRNLA 539
           ++ DLM+LK H+NF  LA
Sbjct: 144 KVGDLMILKDHINFPGLA 161


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 528 GNSDEFLIALNHLGERKSNVSYLRWI*KRTSIW 430
           GNSD+ L++ +HLG+   +  Y   I K  + W
Sbjct: 195 GNSDDVLLSTDHLGKIAVHEFYNLVINKHCTSW 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,406
Number of Sequences: 5004
Number of extensions: 49192
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)