Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0350.Seq
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0620 + 26656072-26656417,26656585-26657396                       34   0.11 
04_04_0619 + 26652923-26653267,26653440-26654273                       34   0.11 
05_06_0167 - 26104527-26104567,26105130-26105226,26105377-261054...    29   2.4  
03_02_0134 + 5820068-5820178,5822439-5822508,5822893-5822939,582...    27   9.7  
03_02_0101 - 5623661-5623669,5623756-5624408,5624504-5624640,562...    27   9.7  

>04_04_0620 + 26656072-26656417,26656585-26657396
          Length = 385

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -3

Query: 472 CFLPKMDIKTNIDMADLSQKMNVTKMFDPQSNDFEGILLNSDP--VYVSAAIQKAQIIVD 299
           C +PK    + +D      ++ +   FDP + D   + +N+ P  +YVS   QK  + VD
Sbjct: 262 CKVPKFKFSSQLDAGGALAQLGLGAPFDPDAADLSRMAVNTPPAGLYVSTMRQKCAVEVD 321


>04_04_0619 + 26652923-26653267,26653440-26654273
          Length = 392

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = -3

Query: 514 IFNSIKSLRREKVKCFLPKMDIKTNIDMADLSQKMNVTKMFDPQSNDFE--GILLNSDP- 344
           +   +    +E   C +PK    + +D      K+ +   FDP + D     + +N+ P 
Sbjct: 255 VMRCVPRSEQEVSPCMVPKFKFSSELDARGALAKLGLGAPFDPLAADLSRMAVSVNTPPE 314

Query: 343 -VYVSAAIQKAQIIVD 299
            +YVSA  QK  + VD
Sbjct: 315 RLYVSAMRQKCAVEVD 330


>05_06_0167 -
           26104527-26104567,26105130-26105226,26105377-26105415,
           26105628-26105678,26105978-26106059,26106222-26106282,
           26106380-26106509,26106630-26106758,26107057-26107314
          Length = 295

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 511 KFI*ISVIWRDIWGRPSFFFGNKDY 585
           K+  IS  W DIWG P+ + GN ++
Sbjct: 261 KYSDISSSWTDIWGSPTRYQGNDEF 285


>03_02_0134 +
           5820068-5820178,5822439-5822508,5822893-5822939,
           5823067-5823175,5823355-5823440,5823768-5823858,
           5824204-5824289,5824649-5824762
          Length = 237

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -1

Query: 612 VLQSGNSSLVILVTKEKRWPTPDVTPNYGNSDEFLIALNHLGERKSNVSYLR 457
           VLQ GNS  ++ +T  K    P       N    ++A N +    +N+ YLR
Sbjct: 43  VLQVGNSLRILDLTNNKIAEIPQEVGTLVNMQRLVLAGNLVESIPANIGYLR 94


>03_02_0101 -
           5623661-5623669,5623756-5624408,5624504-5624640,
           5626032-5626609
          Length = 458

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 19  CYITPHKNIIIYSKLIQ**KFSSNKFY*LKEKIF 120
           C I PH N+ ++S L+Q  K  +NK   ++E +F
Sbjct: 259 CIIMPH-NVFLHSALVQSRKIDTNKKSRVQEAVF 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,573,253
Number of Sequences: 37544
Number of extensions: 269135
Number of successful extensions: 539
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)