Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0350.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      53   2e-07
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      38   0.009
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      34   0.087
SB_14881| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_47661| Best HMM Match : zf-CCHC (HMM E-Value=0.015)                 28   7.5  
SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_23564| Best HMM Match : zf-CCHC (HMM E-Value=0.015)                 27   9.9  

>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 25/72 (34%), Positives = 43/72 (59%)
 Frame = -3

Query: 514 IFNSIKSLRREKVKCFLPKMDIKTNIDMADLSQKMNVTKMFDPQSNDFEGILLNSDPVYV 335
           IFNS+ S R   V+ ++PK  + +   + +  Q++ + KMFD  + DF GI L  + ++V
Sbjct: 218 IFNSVSSQRPADVEVYIPKFKMTSEFKLNEALQELGMKKMFDQAAADFTGISLPPEHLFV 277

Query: 334 SAAIQKAQIIVD 299
           SA + KA + V+
Sbjct: 278 SAVLHKAFVEVN 289


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 20/60 (33%), Positives = 34/60 (56%)
 Frame = -3

Query: 478 VKCFLPKMDIKTNIDMADLSQKMNVTKMFDPQSNDFEGILLNSDPVYVSAAIQKAQIIVD 299
           V+  +PK  +   +++  L Q + V+ +FD +  D  GI   +  +YVS+AI KA I V+
Sbjct: 234 VEVSIPKFRLSQKLELRSLLQDLGVSDIFDSRKADLSGISA-AKGLYVSSAIHKAHIEVN 292


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 18/69 (26%), Positives = 35/69 (50%)
 Frame = -3

Query: 505 SIKSLRREKVKCFLPKMDIKTNIDMADLSQKMNVTKMFDPQSNDFEGILLNSDPVYVSAA 326
           S+++   E+V+  LPK  +     + +  + M  + +F P   D  GI  ++ P+ VS  
Sbjct: 258 SLRNSHPEEVEVTLPKFTLTQEFSLGETLKGMGASDLFSPGKADLSGI--SAAPLVVSEV 315

Query: 325 IQKAQIIVD 299
           + KA + V+
Sbjct: 316 VHKAFVEVN 324


>SB_14881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 615 IVLQSGNSSLVILVTKEKRWPTPDVTPNYGNSDEFLIALN 496
           + L SG      L    KRW +P   P  GNSD F + ++
Sbjct: 312 LTLDSGTLDW-FLTNNPKRWSSPLQLPKIGNSDHFTVMIH 350


>SB_47661| Best HMM Match : zf-CCHC (HMM E-Value=0.015)
          Length = 830

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 627 RILEIVLQSGNSSLVILVTKEKRWPTPDVTPNYGNSDE 514
           RILE ++Q+ +   ++   KEKRW   +   N G  +E
Sbjct: 194 RILEHLIQTISDGDLVKRAKEKRWNLTEFIENAGQKEE 231


>SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1787

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 627 RILEIVLQSGNSSLVILVTKEKRWPTPDVTPNYGNSDE 514
           RILE ++Q+ +   ++   KEKRW   +   N G  +E
Sbjct: 17  RILEHLIQTISDGDLVKRAKEKRWNLTEFIENAGQKEE 54


>SB_23564| Best HMM Match : zf-CCHC (HMM E-Value=0.015)
          Length = 667

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 627 RILEIVLQSGNSSLVILVTKEKRWPTPDVTPNYGNSDEFLIALNHLGE 484
           RILE ++Q+ +   ++    EKRW   +   N G  +E    +N++ E
Sbjct: 148 RILEHLIQTISDGDLVKRAIEKRWNLTEFIENAGQKEEINKQVNYMKE 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,705,475
Number of Sequences: 59808
Number of extensions: 331300
Number of successful extensions: 636
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)