Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0350.Seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41026-4|AAA82351.2|  265|Caenorhabditis elegans Hypothetical pr...    31   0.53 
AY525080-1|AAS13529.1|  362|Caenorhabditis elegans serine or cys...    31   0.70 
AC087794-5|AAM48555.1|  362|Caenorhabditis elegans Serpin protei...    31   0.70 
Z81571-4|CAB04614.1|  268|Caenorhabditis elegans Hypothetical pr...    31   0.93 
Z81571-2|CAB04611.1|  202|Caenorhabditis elegans Hypothetical pr...    31   0.93 
AC084158-32|AAM15619.1|  116|Caenorhabditis elegans Mad (yeast m...    30   1.6  
Z66522-4|CAC70090.1|  349|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U97009-8|AAC69032.1|  534|Caenorhabditis elegans Udp-glucuronosy...    27   8.7  

>U41026-4|AAA82351.2|  265|Caenorhabditis elegans Hypothetical
           protein C28G1.2 protein.
          Length = 265

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 233 PENE--YYFIADRSYVFCVLLERDPLFCGVFN 144
           PEN   Y+F AD  +VF VL    P++ GVF+
Sbjct: 234 PENRLPYHFRADHPFVFAVLRNGHPVYFGVFS 265


>AY525080-1|AAS13529.1|  362|Caenorhabditis elegans serine or
           cysteine protease inhibitorprotein.
          Length = 362

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 230 ENEYYFIADRSYVFCVLLERDPLFCGVFNG 141
           E    FIAD  + F +     P+F GVFNG
Sbjct: 333 EQPVNFIADHPFFFTITFLNHPIFVGVFNG 362


>AC087794-5|AAM48555.1|  362|Caenorhabditis elegans Serpin protein 3
           protein.
          Length = 362

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 230 ENEYYFIADRSYVFCVLLERDPLFCGVFNG 141
           E    FIAD  + F +     P+F GVFNG
Sbjct: 333 EQPVNFIADHPFFFTITFLNHPIFVGVFNG 362


>Z81571-4|CAB04614.1|  268|Caenorhabditis elegans Hypothetical
           protein M01G12.5 protein.
          Length = 268

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 221 YYFIADRSYVFCVLLERDPLFCGVFNGN 138
           Y F  +R ++FCV+    P+  G+F+GN
Sbjct: 241 YIFRVNRPFIFCVVQNGVPVTMGIFDGN 268


>Z81571-2|CAB04611.1|  202|Caenorhabditis elegans Hypothetical
           protein M01G12.2 protein.
          Length = 202

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 221 YYFIADRSYVFCVLLERDPLFCGVFNGN 138
           Y F  +R ++FCV+    P+  G+F+GN
Sbjct: 175 YIFRVNRPFIFCVVQNGVPVTMGIFDGN 202


>AC084158-32|AAM15619.1|  116|Caenorhabditis elegans Mad (yeast
           mitosis arrest deficient)related protein 2, isoform b
           protein.
          Length = 116

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +3

Query: 105 QRKNILQ*WTLISIKDTTKQWIPFE*HTKNIASVGYEVI 221
           Q K ++   + +  K+  ++W  F+ HT+N+A  GYE++
Sbjct: 79  QLKRLVMVISEVKTKEVVERW-QFDIHTENLAEEGYEIV 116


>Z66522-4|CAC70090.1|  349|Caenorhabditis elegans Hypothetical
           protein F14E5.6 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 648 AEISXMHRILEIVLQSGNSSLV-ILVTKEKRWPTPDVTPNYGNSDEFL 508
           +E+    R +E  L + ++    +  T+E++W T  +T N+ N D+ L
Sbjct: 159 SEMEWRFRAVERCLATASAVAAGMFKTEERKWLTVPITTNHANQDKLL 206


>U97009-8|AAC69032.1|  534|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein12 protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 399 LVTFIFWERSAISMFVFISILGRKHLTF-SRLSDLM 503
           L+TF+F+E  +  + +F  I G  H+ F S+++D++
Sbjct: 9   LLTFLFFECYSSKILIFNPIFGFSHVKFISKMADII 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,519,221
Number of Sequences: 27780
Number of extensions: 267030
Number of successful extensions: 631
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)