Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0350.Seq
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    27   0.16 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.9  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 15/59 (25%), Positives = 32/59 (54%)
 Frame = -1

Query: 627 RILEIVLQSGNSSLVILVTKEKRWPTPDVTPNYGNSDEFLIALNHLGERKSNVSYLRWI 451
           R+L +  + GN ++++++   K   T ++T  +  +D  + A N +G   S +S+  WI
Sbjct: 494 RVLSVKRELGNDTVIVMMNFSKNPVTVNLTKLHPPADLVVYACNVVG---SGLSHGNWI 549


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -2

Query: 440 HRYGRPFPEDERNQNVRSTIK*FRRNFIKFGPRI 339
           H Y R FP D   Q V +T    +    ++ P +
Sbjct: 329 HDYSRQFPRDLTTQTVSTTADVLQEEEEEYSPSV 362


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 630 HRILEIVLQSGNSSLVILVTKEKR 559
           + +L I+   GN++++IL+T  KR
Sbjct: 44  YSVLMIISAIGNTTVLILITCRKR 67


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 402 VTFIFWERSAISMFVFISILGRKHLTFSRLSDLMLLKIHLN 524
           +T++ W  SAI+ F++        L F RL+     K   N
Sbjct: 344 LTWLGWINSAINPFIYAFYSADFRLAFWRLTCRKCFKSRTN 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,095
Number of Sequences: 438
Number of extensions: 3608
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)