Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0350.Seq
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16800.1 68415.m01926 high-affinity nickel-transport family p...    28   4.7  
At3g10650.1 68416.m01281 expressed protein                             27   8.1  

>At2g16800.1 68415.m01926 high-affinity nickel-transport family
           protein contains Pfam domain, PF03824: High-affinity
           nickel-transport protein
          Length = 372

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 555 PTPDVTPNYGNSDEFLIALNHLGERKSNVSYLRWI 451
           P+PD +P    S  FLIA +     K N  +++ I
Sbjct: 60  PSPDTSPGLNQSSNFLIASSQTDASKPNPGFIQRI 94


>At3g10650.1 68416.m01281 expressed protein
          Length = 1309

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 327 AAETYTGSEFNKIPSKSFDCGSNIL 401
           +AE   GS FN +P+KS +  S IL
Sbjct: 404 SAEDIPGSSFNLVPTKSSEMASKIL 428


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,553,715
Number of Sequences: 28952
Number of extensions: 242323
Number of successful extensions: 546
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)