Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0349.Seq
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3DEX5 Cluster: DNA-directed RNA polymerase sigma facto...    34   2.9  
UniRef50_Q5ZGC8 Cluster: Putative uncharacterized protein; n=1; ...    33   3.9  
UniRef50_A2FGV4 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_Q7RN32 Cluster: Putative uncharacterized protein PY0199...    32   8.9  

>UniRef50_A3DEX5 Cluster: DNA-directed RNA polymerase sigma factor;
           n=1; Clostridium thermocellum ATCC 27405|Rep:
           DNA-directed RNA polymerase sigma factor - Clostridium
           thermocellum (strain ATCC 27405 / DSM 1237)
          Length = 245

 Score = 33.9 bits (74), Expect = 2.9
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +3

Query: 432 K*LQKNLIKDYIDFILFLITCFYSSK 509
           K L++  IKDYI FIL +++ FYSSK
Sbjct: 27  KHLKEKFIKDYIPFILNIVSSFYSSK 52


>UniRef50_Q5ZGC8 Cluster: Putative uncharacterized protein; n=1;
           Flavobacterium phage 11b|Rep: Putative uncharacterized
           protein - Flavobacterium phage 11b
          Length = 154

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
 Frame = +2

Query: 26  YNFNSRKLKQ-AVHRSVVLCLR*VSKILD*WNVKIQS*LKIS*AEFKIKPIDND*QHLID 202
           ++  SRK+++  +    V+ +   +KI+D   +KI++   I   ++  +PIDN  + ++D
Sbjct: 14  FSCGSRKVERNKIQTKEVVKIDSTAKIVDKETIKIETKKNIENEDYYYEPIDNKSEFIVD 73

Query: 203 LKIMKSTH 226
            K+ K+ H
Sbjct: 74  GKVYKNVH 81


>UniRef50_A2FGV4 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 681

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +1

Query: 208 NHEIHTFLMFLNTYLQFQSRIKEYFFYNSTLARYNVL*FTK*FYSITCLLFLDRYNLG 381
           N E   F +F+  +  +++ IK   F N +  +     FT+ F+ I C   L+ + +G
Sbjct: 197 NFESENFKLFIECFRNYKTNIKTLIFNNCSFTQSTFSYFTQRFFFIDCFHSLESFYIG 254


>UniRef50_Q7RN32 Cluster: Putative uncharacterized protein PY01993;
           n=2; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY01993 - Plasmodium yoelii yoelii
          Length = 416

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +1

Query: 202 FKNHEIHTFLMFL--NTYLQ-FQSRIKEYFFYNSTLARYNV 315
           FK   + TF+  L  N Y+  F   +K Y+FY +TL +YNV
Sbjct: 212 FKKKFLLTFIKILSSNIYVSLFYILLKNYYFYKTTLPKYNV 252


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 491,790,968
Number of Sequences: 1657284
Number of extensions: 8863518
Number of successful extensions: 12492
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12490
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)