Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0349.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    24   1.1  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    22   3.4  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    22   3.4  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   6.0  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    21   6.0  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   6.0  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 178 IYWFNLEFGL 149
           +YWF +EFGL
Sbjct: 399 VYWFTVEFGL 408


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 298 VLSCKKNIL*FCFEIVNMCLKT 233
           VLS  KN L +CF + ++  K+
Sbjct: 276 VLSIVKNCLSYCFNLYHLASKS 297


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 298 VLSCKKNIL*FCFEIVNMCLKT 233
           VLS  KN L +CF + ++  K+
Sbjct: 276 VLSIVKNCLSYCFNLYHLASKS 297


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 269 LKNIFFTTQHLQDIMSFNSPSNFIL*HAFCSLI 367
           ++ +  T  HLQDI+  N     +  H F ++I
Sbjct: 139 VQKVSHTLYHLQDIIDRNGGRAPLTYHQFLAII 171


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/29 (24%), Positives = 14/29 (48%)
 Frame = -1

Query: 226 MCGFHDF*INQMLSIIIYWFNLEFGLRYF 140
           M GF D  +   + ++I+W+ +      F
Sbjct: 249 MLGFQDIYMIVYIIVVIFWYTVNASTNIF 277


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/29 (24%), Positives = 14/29 (48%)
 Frame = -1

Query: 226 MCGFHDF*INQMLSIIIYWFNLEFGLRYF 140
           M GF D  +   + ++I+W+ +      F
Sbjct: 249 MLGFQDIYMIVYIIVVIFWYTVNASTNIF 277


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,428
Number of Sequences: 336
Number of extensions: 2730
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)