Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0349.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    25   6.3  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.3  

>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1095

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -1

Query: 250  NMCLKTLKMCGFHDF*INQMLSIIIYWFN 164
            N+C+   K+C F    +  +  ++ YW N
Sbjct: 975  NICVAICKICRFCSQRVQDLDKVVTYWIN 1003


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 253 QFQSRIKEYFFYNSTLARYNVL*FTK*FYSITCLLFLDRY 372
           + QS IK+Y FY+  L + +   FT    SI CLL L  Y
Sbjct: 289 ELQSLIKKYSFYSERLVK-SADNFT--IESIQCLLILSIY 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,777
Number of Sequences: 5004
Number of extensions: 43455
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)