Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0349.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81532-5|CAE17816.1|  101|Caenorhabditis elegans Hypothetical pr...    31   0.62 
AF024503-6|AAG24094.1|  388|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z81532-5|CAE17816.1|  101|Caenorhabditis elegans Hypothetical
           protein F36F2.8 protein.
          Length = 101

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = +2

Query: 287 TTQHLQDIMSFNSPSNFIL*HAFCSLIDII*VNKALT**CLPASFDCIKIITKKFN*RLH 466
           +TQH     SF   +N +  H +C   D    N+ +T    P +F CI    +K N   H
Sbjct: 18  STQHRTCRRSFQCLTNEVCHHGYCQSFDD---NRCITSQFCPRNFKCINGNCEKHNGSSH 74

Query: 467 RLYTFSNYMF 496
            L+  + Y F
Sbjct: 75  FLFGSAMYCF 84


>AF024503-6|AAG24094.1|  388|Caenorhabditis elegans Hypothetical
           protein F31F4.17 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 214 EIHTFLMFLNTYLQFQSRIKEYFFYNSTLARYNVL*FTK*FYSITCLLF 360
           EI  FL+FL      +S       Y++ L RYN++ F   F++  CL +
Sbjct: 17  EIMRFLLFLQLLKMQKSNC-----YSTKLIRYNIIVFIILFFAYNCLTY 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,846,856
Number of Sequences: 27780
Number of extensions: 229913
Number of successful extensions: 382
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)