Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0349.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    26   0.24 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    26   0.24 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   0.98 
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   9.2  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   9.2  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 404 CLPASFDCIKIITKKFN*RLHRLYTFSNYMFLFFKALIXLLDEVLFTPNH 553
           CL AS    +I++  +N  LH    FS Y FL    LI +   + ++  H
Sbjct: 451 CLLASDALKQILSAAYNVELHNSSPFSIYSFLERLNLIFMSSSLQWSSTH 500


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 404 CLPASFDCIKIITKKFN*RLHRLYTFSNYMFLFFKALIXLLDEVLFTPNH 553
           CL AS    +I++  +N  LH    FS Y FL    LI +   + ++  H
Sbjct: 489 CLLASDALKQILSAAYNVELHNSSPFSIYSFLERLNLIFMSSSLQWSSTH 538


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 178 IYWFNLEFGL 149
           IYWF +EFGL
Sbjct: 377 IYWFTVEFGL 386


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 285 LQLNTCKI*CPLIHQVILFYNM 350
           LQL  C++ CPL   + L  N+
Sbjct: 310 LQLPGCEVLCPLYKYLQLIENV 331


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 285 LQLNTCKI*CPLIHQVILFYNM 350
           LQL  C++ CPL   + L  N+
Sbjct: 325 LQLPGCEVLCPLYKYLQLIENV 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,729
Number of Sequences: 438
Number of extensions: 3106
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)