Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0349.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37270.1 68418.m04477 zinc finger (C3HC4-type RING finger) fa...    29   1.8  
At5g37250.1 68418.m04475 zinc finger (C3HC4-type RING finger) fa...    28   4.1  
At5g37230.1 68418.m04472 zinc finger (C3HC4-type RING finger) fa...    28   4.1  
At2g32040.1 68415.m03914 integral membrane transporter family pr...    28   5.4  

>At5g37270.1 68418.m04477 zinc finger (C3HC4-type RING finger)
           family protein ow similarity to RING-H2 finger protein
           RHA3b [gi:3790575], RHA1a [gi:3790554]; contains Pfam
           domain zinc finger, C3HC4 type (RING finger) PF00097
          Length = 208

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 132 DCILTFHQSKIFDTHLRQRTTDLC 61
           DC   FHQS IF+   RQR+  LC
Sbjct: 173 DCFHLFHQSCIFEWLKRQRSCPLC 196


>At5g37250.1 68418.m04475 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 finger protein
           RHA3b [gi:3790575], RHA3a [gi:3790573]; contains Pfam
           domain zinc finger, C3HC4 type (RING finger) PF00097
          Length = 192

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 132 DCILTFHQSKIFDTHLRQRTTDLC 61
           DC   FHQ+ IF+   RQR+  LC
Sbjct: 157 DCFHLFHQNCIFEWLKRQRSCPLC 180


>At5g37230.1 68418.m04472 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 finger protein
           RHA3b, Arabidopsis thaliana, PIR:T41745 [gi:3790575];
           contains Pfam domain zinc finger, C3HC4 type (RING
           finger) PF00097
          Length = 208

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 132 DCILTFHQSKIFDTHLRQRTTDLC 61
           DC   FHQS IF    RQR+  LC
Sbjct: 173 DCFHLFHQSCIFKWLKRQRSCPLC 196


>At2g32040.1 68415.m03914 integral membrane transporter family
           protein contains 9 transmembrane domains; contains Pfam
           PF03092: BT1 family; contains TIGRFAMS TIGR00788:
           folate/biopterin transporter; similar to high affinity
           folic acid/methotrexate transporter 5 (GI:21898554)
           [Leishmania tarentolae]
          Length = 560

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 149 KIFLITTVF*HSISLKFLILISGRELQI 66
           KIFL+TT+F   + +  +IL+SG   Q+
Sbjct: 414 KIFLVTTIFGTGLGMTQVILVSGFNRQL 441


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,703,121
Number of Sequences: 28952
Number of extensions: 195091
Number of successful extensions: 238
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)