Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0348.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    27   1.6  
SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51...    27   2.7  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    27   2.7  
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.3  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   8.4  

>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +2

Query: 182 NRRKSG-SGHKSATVQSSTTDKTSTAVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTL 355
           N+  SG S  K AT  +++T KT       P  P A+PG          P +   H+TL
Sbjct: 366 NQTSSGFSFGKPATDTTTSTSKTGPLFGNKPADPSAKPGATASTTPSEPPPSSIKHKTL 424


>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
           L51|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 145

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 249 APQCQQHRFHLKHVRGKHNHFRQFFYLGRFKYI 347
           A + Q   FH+ + +GKH   R ++  GR K I
Sbjct: 52  AKESQDVEFHVTNRQGKHPLIRAYYNTGREKVI 84


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 182 NRRKSGSGHKSATVQSSTTDKTSTAVPAAPIPPQ 283
           N +   S H  A VQS  + +T+ A P+A   PQ
Sbjct: 57  NMQVQSSQHLEANVQSPVSSQTTYATPSAYAVPQ 90


>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 144 ATPRHLKTVSGGGIEGNQDPVTKALPYSHPQPIRRA 251
           A  +H++TV         DP+ KA P  HPQ +  A
Sbjct: 122 ALAKHMRTVHEADTLRPSDPIPKAHP-MHPQNVANA 156


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 87  VDVTLPSWLLELYPSVLLPADVVDSSAAA 1
           V  TL   +LE  PS+++PAD  ++   A
Sbjct: 603 VTQTLDGRILEGVPSIVIPADTTENMGVA 631


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,061,118
Number of Sequences: 5004
Number of extensions: 41611
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)