Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0348.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.40 
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)               31   0.71 
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)              30   1.6  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017)        29   2.9  
SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               29   3.8  
SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07)               29   3.8  
SB_33035| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9)            24   4.3  
SB_56182| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_52639| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   5.0  
SB_32455| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)                28   6.6  
SB_34087| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_30560| Best HMM Match : Herpes_UL73 (HMM E-Value=4.5)               27   8.7  
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)                  27   8.7  
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +2

Query: 248 STAVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVI 388
           S + PA   P  +RP  A P     LP+   V R LP L  VFPG++
Sbjct: 309 SISRPATAPPSISRPATAPPPVFRGLPQLPPVFRCLPQLPPVFPGLL 355


>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
          Length = 867

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +3

Query: 6   PRKNPPRPLVAALKDIVPVAMMEA*HPPTVPAQVEELLPAQR 131
           P  +PPRPL A L +  P+  M    PPT+P      LP  R
Sbjct: 233 PPPSPPRPLAAKLPEPPPIPNM----PPTLPPPTLGYLPTAR 270


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = +2

Query: 197 GSGHKSATVQSSTTDKTSTAVPAAP----IPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 364
           G G  +A  ++ T+   +T VPA P      P   P Q QPL     P     + T PP 
Sbjct: 84  GGGWGTAKEKTETSQPATTTVPAPPPSSTTAPVNAPAQQQPLLQPQRPTPPSSYPTQPPS 143

Query: 365 R 367
           R
Sbjct: 144 R 144


>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
          Length = 1230

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 18  PPRPLVAALKDIVPVAMMEA*HPPTVPAQ--VEELLPAQRQPPKA 146
           PPRP  +   D  PV+   A  PP  P+Q   ++ +P+ + P +A
Sbjct: 433 PPRPYASQFADAPPVSPTTATPPPPPPSQPPPQQFIPSPQFPEQA 477


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +2

Query: 185  RRKSGSGHKSATVQSSTTDKTSTAVPAAPIPPQARPGQAQPL---QAVLLPRAVQVHRTL 355
            ++ + S   S + +S +T   S +VP  P PP  +PG A  +   +       + V+  +
Sbjct: 2296 QKDANSSPGSNSTRSPSTGSHSPSVPPPPPPPPEQPGDAMDIEDEEGQPSGSKILVNTPI 2355

Query: 356  PPLRLVFP 379
             P RL  P
Sbjct: 2356 APTRLALP 2363


>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2749

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +2

Query: 251  TAVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPP 361
            T +P+ P+PP+A    G++QP    L P+A+++    PP
Sbjct: 1006 TTLPSTPLPPKALKVLGESQPSTQRLPPKALKLLGESPP 1044


>SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017)
          Length = 893

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 105 VEELLPAQRQPPKATPRHLKTVSGGGIEGNQDPVTKALPYSHPQPIRRAP 254
           ++  LPA+RQP     R +     G     +D  TK   +S P+P  R P
Sbjct: 533 LQSKLPAERQPLTQATRGIVQEGTGQHSDWKDETTKVNDHSDPKPNPRTP 582


>SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 194 SGSGHKSATVQSSTTDKTSTAVPAAPIPPQARP--GQAQPL 310
           S + + S  V +S  + +  A P+ P PP ARP  G  +PL
Sbjct: 343 SSTRNASTAVTASAGNNSPLAPPSRPPPPSARPLTGNEEPL 383


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 230 STTDKTSTAVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 361
           ST     T VP  P+PP   P Q+ P   +L+P    +   LPP
Sbjct: 624 STAQPRPTTVP--PLPPTPPPRQSTPPPLLLIPLLPLLTLPLPP 665


>SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07)
          Length = 505

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +3

Query: 18  PPRPLVAALKDIVPVAMMEA*HPPTVPAQVEELLPAQRQPPKATPRHLKTVSG 176
           P  PL +    +   + M    PP   AQ  E LP+    P    +H++++ G
Sbjct: 53  PVSPLHSPKPHMANKSKMPVAQPPPAQAQAFEFLPSATNQPSHHQQHIESIDG 105


>SB_33035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = -3

Query: 200 ILISFYSTTRNRLQMTRRRFWRLTLSWKKLLHLCWNRRWML 78
           +++S  ++ + +L  +R R  +L+  W  +  + W +RW+L
Sbjct: 24  LMLSTRASGKTKLGRSRPRTCQLSSDWAAVTLVTWTKRWLL 64


>SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 191 KSGSGHKSATVQSSTTDKTSTAVPAAP-IPPQARPG 295
           KS    KS++  SSTT    T VPA P  PP+  PG
Sbjct: 61  KSSKSSKSSSTSSSTT-HGPTPVPATPSSPPRPTPG 95


>SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9)
          Length = 706

 Score = 23.8 bits (49), Expect(2) = 4.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 361 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC 263
           W     Y N  +  +C K  C+   C  WNRCC
Sbjct: 306 WSAEERYNNSCQLGHCKK-ACIG--CPDWNRCC 335



 Score = 23.0 bits (47), Expect(2) = 4.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 286 CLRWNRCCWHCG 251
           C  WN+CC+  G
Sbjct: 346 CPSWNKCCYTTG 357


>SB_56182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 525

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 406 LLHKPGQGKICLCFENIFDIPYHLR 480
           LL  P  GKI  CF NI   P H++
Sbjct: 279 LLESPSFGKIIECFRNILASPGHIK 303


>SB_52639| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 359

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 176 TRNRLQMTRRRFWRLTLSWKKLLHLCWNRRWMLRF 72
           T   LQ +R+R  ++ L+   L  +CW   W+ +F
Sbjct: 232 TETHLQRSRKRVLKMLLAVTLLFAVCWLPLWIFQF 266


>SB_32455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +2

Query: 176 WWNRRKS--GSGHKSATVQSSTTDKTSTAVPAAPIPPQARPGQAQP 307
           WW+  +S   SG     VQ       S   PAAP PP   PG+  P
Sbjct: 313 WWDAERSVPDSGDSGRAVQPIHWRSHSRLHPAAP-PPPPEPGRFYP 357


>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
          Length = 382

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 248 STAVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 361
           S  +P AP+ P   P    P +A+  P        LPP
Sbjct: 217 SPHIPPAPLHPHIPPAPPNPSKAIATPNPPMPETPLPP 254


>SB_34087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
 Frame = +2

Query: 176 WWNRRKSGSGHKSA-TVQSSTTDKTS----TAVPAAPIPPQARPGQAQPLQAVLLPRAVQ 340
           W +  + GSG+ SA T Q S   + S    +   AAP+           + A L+ R   
Sbjct: 420 WLDLHRVGSGYSSAITRQVSNASRVSLNSISDALAAPLEKSCTDLYDSIVSAALVGRVTT 479

Query: 341 VHRTLPPLRLV 373
           ++RT P L +V
Sbjct: 480 LYRTRPELEIV 490


>SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = +2

Query: 260 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPG 382
           P  PIP QA PGQA P   +  P  VQ  + + P    FPG
Sbjct: 5   PMKPIPGQALPGQAIP--GMQGPYQVQPPQGVSPGMPGFPG 43


>SB_30560| Best HMM Match : Herpes_UL73 (HMM E-Value=4.5)
          Length = 87

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 218 TVQSSTTDKTSTAVPAAPIPPQARPGQAQPLQAVLLPRAVQVHR 349
           T  + TT  T+T +P+  +PP   P  + P        ++  HR
Sbjct: 24  TTITITTITTNTTLPSTSLPPSPSPSPSPPSPPTPSSSSIDCHR 67


>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
          Length = 1313

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
 Frame = +3

Query: 138  PKATPRHLKTVSGGGIEGNQDPVTKALP---------YSHPQPIRRAPQ 257
            P+   + LK + GG I+G +  V   LP         Y  P P RR PQ
Sbjct: 1208 PEECEKALKHMDGGQIDGQEIAVQSVLPPRPRDVRPAYRRPSPPRRRPQ 1256


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 203 GHKSATVQSSTTDKTSTAVPAAPIPPQARP 292
           GHKS+ ++  T  + +   P+ P PP   P
Sbjct: 53  GHKSSRLKGRTVRRITGGAPSTPAPPPPPP 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,814,814
Number of Sequences: 59808
Number of extensions: 327710
Number of successful extensions: 1262
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)