Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0348.Seq
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37983-4|CAA86057.1| 803|Caenorhabditis elegans Hypothetical pr... 36 0.022
U64835-6|AAG24199.1| 341|Caenorhabditis elegans Serpentine rece... 33 0.12
U80451-2|AAB37837.1| 223|Caenorhabditis elegans Hypothetical pr... 31 0.62
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 30 1.1
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical... 30 1.1
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 29 1.9
U58760-9|AAK31465.1| 654|Caenorhabditis elegans Dishevelled rel... 29 2.5
Z81106-5|CAB03223.3| 432|Caenorhabditis elegans Hypothetical pr... 29 3.3
U64857-17|AAC25865.1| 161|Caenorhabditis elegans Hypothetical p... 29 3.3
AL033536-12|CAD45609.2| 432|Caenorhabditis elegans Hypothetical... 29 3.3
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr... 28 4.4
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ... 28 4.4
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 28 5.8
Z92782-8|CAB07185.1| 197|Caenorhabditis elegans Hypothetical pr... 28 5.8
U61947-1|AAB03136.3| 667|Caenorhabditis elegans Thioredoxin red... 28 5.8
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 5.8
AF148217-1|AAD41826.1| 667|Caenorhabditis elegans thioredoxin r... 28 5.8
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ... 28 5.8
Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr... 27 7.7
>Z37983-4|CAA86057.1| 803|Caenorhabditis elegans Hypothetical
protein B0393.4 protein.
Length = 803
Score = 35.9 bits (79), Expect = 0.022
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +3
Query: 3 RPRKNPPRPLVAALKDIVPVAMMEA*HPPTVPAQVEELLPAQRQPPK-ATPRHLK-TVSG 176
RP + P PL + ++V + + + P+VP + +QPP+ +TP+ K V+
Sbjct: 53 RPSEPIPPPLPEPIPELVQILLAAEPNKPSVPKRSNRKKLTYKQPPRNSTPQVPKVAVTL 112
Query: 177 GGIEGNQDPVTKALPYSHPQPI 242
E +PV + +P S P+PI
Sbjct: 113 PVPEPVPEPVPEPVPESTPEPI 134
>U64835-6|AAG24199.1| 341|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 9 protein.
Length = 341
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -3
Query: 125 SWKKLLHLCWNRRWMLRFHHGYWNYILQCCYQRTW 21
SW LLHL + W L Y NYIL TW
Sbjct: 91 SWSALLHLFIHSMWSLLLSFAYRNYILSSAPPSTW 125
>U80451-2|AAB37837.1| 223|Caenorhabditis elegans Hypothetical
protein F11G11.5 protein.
Length = 223
Score = 31.1 bits (67), Expect = 0.62
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 194 SGSGHKSATVQSSTTDKTSTAVPAAPIPPQARPGQAQPLQAVLLP 328
+G + S +Q+S+ S VPA P PP A G A + + +P
Sbjct: 49 AGFVYPSTDIQNSSEVHVSAPVPAGPPPPHASAGPAPTMSSYDMP 93
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = -1
Query: 316 CLKWLCLPRTCLRWNRCCWHCGARLIGCG 230
C + C R C CC CG GCG
Sbjct: 103 CCRTCCCTRCCTCCRPCCCGCGCGCCGCG 131
>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
protein Y75B8A.13 protein.
Length = 1420
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 90 TVPAQVEELLPAQRQPPKATPRHLKTVSGGGIEGNQDPVTKA 215
T P Q EEL + P+A+P+ +TV IE D +A
Sbjct: 506 TAPPQEEELFDDALEDPEASPKSPETVDAAPIEEGSDAAPEA 547
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = +2
Query: 248 STAVPAAPIPPQARPGQ----AQPLQAV-LLPRAVQVHRTLPP 361
+T P AP+ P A+P Q QP+Q+V LP+ ++ R + P
Sbjct: 1466 TTVAPVAPVAPVAQPVQPIQPVQPVQSVQSLPQPAEIPRVVVP 1508
>U58760-9|AAK31465.1| 654|Caenorhabditis elegans Dishevelled
related protein 2 protein.
Length = 654
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 225 SHPQPIRRAPQC-QQHRFHLKHVRGKHNHFRQFFY 326
+H + APQ ++H H+KH +HNH RQ Y
Sbjct: 243 AHAYNRKHAPQAYERHLPHMKH-NNRHNHHRQNHY 276
>Z81106-5|CAB03223.3| 432|Caenorhabditis elegans Hypothetical
protein R06C1.6 protein.
Length = 432
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 189 GNQDPVTKALPYSHPQPIRRAPQCQQHRFHLKHVRGKHN 305
G + + A S P P+ +A Q QQH L H+ G H+
Sbjct: 35 GISNDLPTAYVTSTPLPLAKAQQQQQHEQQLHHLPGYHS 73
>U64857-17|AAC25865.1| 161|Caenorhabditis elegans Hypothetical
protein C37C3.11 protein.
Length = 161
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 526 GILQVVLGCIKHRYSYXDGKEYRICFRSKGIFFLDQACVK 407
G+L V L ++ +S +G +Y ICF G+ Q VK
Sbjct: 106 GVLYVPLFFLQTSHSLMEGLDYFICFSLSGVLLFLQWAVK 145
>AL033536-12|CAD45609.2| 432|Caenorhabditis elegans Hypothetical
protein R06C1.6 protein.
Length = 432
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 189 GNQDPVTKALPYSHPQPIRRAPQCQQHRFHLKHVRGKHN 305
G + + A S P P+ +A Q QQH L H+ G H+
Sbjct: 35 GISNDLPTAYVTSTPLPLAKAQQQQQHEQQLHHLPGYHS 73
>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
protein F54D11.2 protein.
Length = 1145
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 188 RKSGSGHKSATVQSSTTDKTSTAVPAAPIP 277
RKS S KS+++ + TST P+A +P
Sbjct: 103 RKSASKRKSSSLMNKDEPSTSTEAPSADVP 132
>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
protein R155.2 protein.
Length = 1308
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/59 (32%), Positives = 23/59 (38%)
Frame = +2
Query: 215 ATVQSSTTDKTSTAVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVII 391
A V S T A P P PP PG A P Q P + ++ + GVII
Sbjct: 815 ALVDSFTEYGKILAKPPPPKPPAPSPGGAAPRQGAAKPSSQNAPESISLWPYIAIGVII 873
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 9 RKNPPRPLVAALKDIVPVAMMEA*HPPTVPAQVEELLPAQRQPPKATP 152
R+NPP P V + +A P PA ++ P Q+ PPK TP
Sbjct: 378 RQNPPMPAVQQAP-----SSQQATQAPPKPAP-QQAPPVQQNPPKPTP 419
>Z92782-8|CAB07185.1| 197|Caenorhabditis elegans Hypothetical
protein F14F8.9 protein.
Length = 197
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 209 CDRILISFYSTTRNRLQMTRRRFWRLTLSWKKLLHLCWNRR 87
CDR LI + RNR + + WRLT S + ++ +R
Sbjct: 50 CDRYLIETFHNMRNRFKSEKN--WRLTKSCENYINFQVRKR 88
>U61947-1|AAB03136.3| 667|Caenorhabditis elegans Thioredoxin
reductase protein 1 protein.
Length = 667
Score = 27.9 bits (59), Expect = 5.8
Identities = 23/91 (25%), Positives = 34/91 (37%)
Frame = +2
Query: 185 RRKSGSGHKSATVQSSTTDKTSTAVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 364
+R+ S+ +D S V A+ +PP RP P ++ LP V PL
Sbjct: 12 KRQPRQQEASSPANPHVSDTLSMGVAASGMPPPKRPA---PAESPTLPGETLVDAPGIPL 68
Query: 365 RLVFPGVIIQA*TDFYTSLVKEKYAFASKTY 457
+ FY S +EK +TY
Sbjct: 69 KEALKEAANSKIVIFYNSSDEEKQLVEFETY 99
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 27.9 bits (59), Expect = 5.8
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Frame = +3
Query: 6 PRKNPPRPLVAALKDIVPVAMMEA*HPPTVPAQV-EELLPAQRQPPKATPRHLKTVSGGG 182
P+ PP P + A + PP PA ++ +PA PP P+H
Sbjct: 24 PQPPPPPPPPKPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPP 83
Query: 183 IEG---NQDPVTKALPYSHPQPIRRAP 254
+ N PV P +PQ AP
Sbjct: 84 LASYPQNAVPVPAPPPAPYPQHAVPAP 110
>AF148217-1|AAD41826.1| 667|Caenorhabditis elegans thioredoxin
reductase protein.
Length = 667
Score = 27.9 bits (59), Expect = 5.8
Identities = 23/91 (25%), Positives = 34/91 (37%)
Frame = +2
Query: 185 RRKSGSGHKSATVQSSTTDKTSTAVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 364
+R+ S+ +D S V A+ +PP RP P ++ LP V PL
Sbjct: 12 KRQPRQQEASSPANPHVSDTLSMGVAASGMPPPKRPA---PAESPTLPGETLVDAPGIPL 68
Query: 365 RLVFPGVIIQA*TDFYTSLVKEKYAFASKTY 457
+ FY S +EK +TY
Sbjct: 69 KEALKEAANSKIVIFYNSSDEEKQLVEFETY 99
>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
protein R10F2.1 protein.
Length = 2779
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 194 SGSGHKSATVQSSTTDK-TSTAVPAAPIPPQARP 292
SG + ++ SS TD S V A PIPP+ RP
Sbjct: 2661 SGIDPDNVSINSSVTDYLVSLGVNANPIPPRIRP 2694
>Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical
protein Y57G11C.9b protein.
Length = 625
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/54 (27%), Positives = 20/54 (37%)
Frame = +3
Query: 96 PAQVEELLPAQRQPPKATPRHLKTVSGGGIEGNQDPVTKALPYSHPQPIRRAPQ 257
P + P QPP + T + Q P+ LP + PQP PQ
Sbjct: 375 PKMIVRETPQPAQPPVQVNSYYTTTPIQQQQQQQQPIPPQLPTAPPQPPPTTPQ 428
>Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical
protein C44H9.6 protein.
Length = 610
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Frame = -1
Query: 361 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC----WHC 254
W+KRP Y R R ++ K LP + + C W C
Sbjct: 567 WKKRPYYRRRQRKRSAQKEKSLPESFQAMGKSCAKMVWRC 606
>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
protein F07A11.4 protein.
Length = 1095
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +2
Query: 185 RRKSGSGHKSATVQSSTTDKTSTAVPAAPIPPQARPGQAQPLQAVLLPRAV 337
RR+ + SS T + + VP P PP P A ++ LPR+V
Sbjct: 335 RRERLEREEEGRNSSSMTPQPQSLVPPPPPPPPPPPSAASNGRSGYLPRSV 385
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,584,388
Number of Sequences: 27780
Number of extensions: 244068
Number of successful extensions: 948
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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