Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0348.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.3  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   5.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   6.9  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   9.2  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   9.2  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   9.2  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -1

Query: 271 RCCWHC 254
           +CCWHC
Sbjct: 604 QCCWHC 609


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 197 GSGHKSATVQSSTTDKTSTAVPAAPIPP 280
           G+  + A  Q STTDK  +A+     PP
Sbjct: 223 GATPRKAPPQLSTTDKKGSAIDLDIGPP 250


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 162  KTVSGGGIEGNQDPVT-KALPYSHPQPIRRAPQCQQHRFHLKHVRGKHN 305
            + V  GG + ++D  T  + P    Q  ++  Q QQ +  L H    HN
Sbjct: 1427 REVHNGGQQEDRDRKTLTSAPQQPQQQQQQQQQQQQQQQQLNHYPDLHN 1475


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 245 TSTAVPAAPIPPQARPGQA 301
           TST   A P PP    G A
Sbjct: 44  TSTTAAATPTPPSVPVGSA 62


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +2

Query: 173 WWWNRRKSG-SGHKSATVQSST 235
           WWWN + S  S  K + ++ +T
Sbjct: 366 WWWNMKISNLSFDKQSLLKENT 387


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 90  SVDVTLPSWLLELYP 46
           S  +TLPSW   ++P
Sbjct: 186 SYGLTLPSWTNNIFP 200


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 90  SVDVTLPSWLLELYP 46
           S  +TLPSW   ++P
Sbjct: 201 SYGLTLPSWTNNIFP 215


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 90  SVDVTLPSWLLELYP 46
           S  +TLPSW   ++P
Sbjct: 89  SYGLTLPSWTNNIFP 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,088
Number of Sequences: 438
Number of extensions: 3585
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)