Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0348.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79650.2 68414.m09288 DNA repair protein RAD23, putative simi...    30   1.3  
At1g13050.1 68414.m01513 expressed protein                             29   3.1  
At1g06490.1 68414.m00688 glycosyl transferase family 48 protein ...    28   4.1  
At5g51540.1 68418.m06391 peptidase M3 family protein / thimet ol...    28   5.4  
At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica...    28   5.4  
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t...    28   5.4  
At5g61090.1 68418.m07665 proline-rich family protein contains pr...    27   7.2  
At2g40330.1 68415.m04972 Bet v I allergen family protein contain...    27   7.2  
At1g32190.1 68414.m03959 expressed protein                             27   7.2  

>At1g79650.2 68414.m09288 DNA repair protein RAD23, putative similar
           to DNA repair by nucleotide excision (NER) RAD23
           protein, isoform II GI:1914685 from [Daucus carota];
           contains Pfam profiles PF00240: Ubiquitin family,
           PF00627: UBA/TS-N domain
          Length = 365

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = +2

Query: 182 NRRKSGSGHKSATVQ--SSTTDKTSTAVPA----APIPPQARPGQAQP 307
           ++ KSG     A+VQ  S+TT  T  A P+    +P+P    P Q QP
Sbjct: 75  SKSKSGGSAGQASVQPVSATTSSTKPAAPSTTQSSPVPASPIPAQEQP 122


>At1g13050.1 68414.m01513 expressed protein
          Length = 317

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 218 TVQSSTTDKTSTAVPAAPIPPQARPGQAQPLQ 313
           T+  S + +     P  P+PP+  P  A+PLQ
Sbjct: 63  TIHESPSSRPLPLRPEEPLPPRHNPNSARPLQ 94


>At1g06490.1 68414.m00688 glycosyl transferase family 48 protein
            contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1933

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = -1

Query: 532  YKGILQVVLGCIKHRYSYXDGKEYRICFRSKGIFFLDQACVKVCSRLNDDSWK 374
            Y  ILQ++L     R +Y D +E  +  +S+ +F+     +K C +L+++ ++
Sbjct: 1238 YNNILQLMLKYPSLRVAYIDEREETVNGKSQKVFY--SVLLKGCDKLDEEIYR 1288


>At5g51540.1 68418.m06391 peptidase M3 family protein / thimet
           oligopeptidase family protein low similarity to
           SP|Q99797 Mitochondrial intermediate peptidase,
           mitochondrial precursor (EC 3.4.24.59) {Homo sapiens};
           contains Pfam profile PF01432: Peptidase family M3
          Length = 860

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 10/43 (23%)
 Frame = -3

Query: 116 KLLHLCWNR----RWMLRFHH------GYWNYILQCCYQRTWW 18
           K  H  WN      W +RF H      GY++Y+   C+  T W
Sbjct: 601 KRQHTSWNHVEGTHWYIRFSHLLNYGAGYYSYLYAKCFASTIW 643


>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
            domain-containing protein / HNH endonuclease
            domain-containing protein similar to HepA-related protein
            HARP [Homo sapiens] GI:6693791; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain, PF01844: HNH endonuclease
          Length = 1190

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 393  RREQTFTQAWSRKNMPLLR 449
            R+E+ +TQAWS  N PL +
Sbjct: 966  RKEKEYTQAWSMSNEPLCK 984


>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893
          Length = 687

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 173 WWWNRRKSGSGHKSATVQSSTTDKTSTAVPAAP 271
           +W  +R S     S++ QS+TT  TSTA   AP
Sbjct: 618 YWSLQRHSRESSDSSSTQSTTTTCTSTASSPAP 650


>At5g61090.1 68418.m07665 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           contains similarity to vegetative cell wall protein gp1
           [Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420;
           common family members: At4g18570, At3g25690, At4g04980
           [Arabidopsis thaliana]
          Length = 344

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +2

Query: 221 VQSSTTDKTSTAVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRT 352
           V  S T +   +VPA PIP   RP  A+P      PR V    T
Sbjct: 95  VPPSRTPEAPRSVPACPIPEIPRPVPARPTPET--PRPVTARPT 136


>At2g40330.1 68415.m04972 Bet v I allergen family protein contains
           Pfam profile PF00407: Pathogenesis-related protein Bet v
           I family
          Length = 215

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -2

Query: 552 RFKILNTTKEYXKSC*VVLNTDILTXMVRNIEYVFEAKAYFSLTRL 415
           RF+     K + KSC VV+        VR +  V    A FSL RL
Sbjct: 82  RFEHPQAYKHFVKSCHVVIGDGREVGSVREVRVVSGLPAAFSLERL 127


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -1

Query: 334 RPR*KNCLKWLCL--PRT-CLRWNRCCWHCGARLIGCG 230
           +P+   C  W CL  P T C R + CC  C + L  CG
Sbjct: 365 KPKCPKCSCWKCLKCPDTECCRSSCCCSGCFSWLCCCG 402


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,986,914
Number of Sequences: 28952
Number of extensions: 231731
Number of successful extensions: 759
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)