Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0347.Seq
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 97 2e-21
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 52 8e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 49 6e-07
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 48 1e-06
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 38 0.001
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 36 0.004
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 35 0.008
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 31 0.13
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 29 0.39
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 29 0.39
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 29 0.68
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 29 0.68
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 28 0.90
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.7
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 27 2.7
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 3.6
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 26 3.6
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 26 3.6
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 3.6
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 6.3
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 6.3
SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit Med31|... 25 8.4
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 97.1 bits (231), Expect = 2e-21
Identities = 43/92 (46%), Positives = 58/92 (63%)
Frame = +1
Query: 256 LQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 435
L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA FP+YV + VK
Sbjct: 79 LIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVK 138
Query: 436 TMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
+G++ PTPIQ Q WP + ++ +G+ TGS
Sbjct: 139 QLGFEAPTPIQQQAWPMAMSGRDMVGISATGS 170
Score = 29.1 bits (62), Expect = 0.52
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 461 PFKLKAGPIAMSGKNLLAXPKRVPGKNVGLHLASXCHIN 577
P + +A P+AMSG++++ GK + L + HIN
Sbjct: 147 PIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHIN 185
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 51.6 bits (118), Expect = 8e-08
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVK 435
+ F K+FY + SP EV+E R + + + G++ P+ + + +
Sbjct: 375 EDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVIN 434
Query: 436 TMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
++GY++PT IQAQ P ++ IGV +TGS
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRDVIGVAKTGS 466
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 48.8 bits (111), Expect = 6e-07
Identities = 21/66 (31%), Positives = 39/66 (59%)
Frame = +1
Query: 334 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIG 513
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P K+ IG
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 514 VXQTGS 531
+ +TGS
Sbjct: 292 IAETGS 297
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 47.6 bits (108), Expect = 1e-06
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Frame = +1
Query: 325 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYV 495
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 496 WKEFIGVXQTGS 531
++ +G+ +TGS
Sbjct: 202 GRDVVGIAETGS 213
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1
Query: 349 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTG 528
V VSG ++ P+ F ++ Q +K GY +PTP+Q P ++ + QTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 529 S 531
S
Sbjct: 217 S 217
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 35.9 bits (79), Expect = 0.004
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
F+E D + + + +G+K PTPIQ + P ++ IG+ QTGS
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGS 94
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 35.1 bits (77), Expect = 0.008
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +1
Query: 319 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVW 498
E E+ R + V ++ + I+ F + + +Q+ +K MG++ T IQ + P
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 499 KEFIGVXQTGS 531
++ +G +TGS
Sbjct: 127 RDVLGAAKTGS 137
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 31.1 bits (67), Expect = 0.13
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = +1
Query: 325 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKE 504
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ ++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 505 FIGVXQTGS 531
I Q+G+
Sbjct: 61 VIAQAQSGT 69
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 29.5 bits (63), Expect = 0.39
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
F+ N +++ V G+K+ TP+QA P K+ + TGS
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGS 49
>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 29.5 bits (63), Expect = 0.39
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 364 VEVHNPIQYFEEAN--FPDYVQQGVKTMGYKEPTPIQAQGWPDSYV-WKEFIG 513
+E HNPI + F ++ Q M K P ++A+G PD V K F+G
Sbjct: 415 IESHNPIDNNKHHRMLFSNFAAQTEALMLGKTPAEVKAEGTPDEIVPHKTFVG 467
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.7 bits (61), Expect = 0.68
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -1
Query: 244 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPV--TR 71
P S V PS F ++ S +S AT+AK + +S KF + V T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 70 HDYFSDLVEDVYLNYGFFLTQG 5
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 28.7 bits (61), Expect = 0.68
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
F+ + + + G+K PTPIQ + P ++ +G+ +TGS
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGS 117
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 28.3 bits (60), Expect = 0.90
Identities = 12/57 (21%), Positives = 29/57 (50%)
Frame = +1
Query: 361 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
G+ + + F + N +Q+ + +++PT +Q++ P + K+ + +TGS
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGS 62
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 453 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 328
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 496 RHSYRASLELEWASVLCNPLSLHLVAHNQENLLLQ 392
R YR + +WASV N LH +N L+Q
Sbjct: 26 RVPYRNKKQKKWASVHNNEAQLHSANKRNDNCLIQ 60
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 313 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 444
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 461 PFKLKAGPIAMSGKNLLAXPKRVPGKNVGLHLAS 562
P + ++ PIA+SG+++LA K GK + S
Sbjct: 69 PIQEESIPIALSGRDILARAKNGTGKTAAFVIPS 102
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 442 GYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
G+ +P PIQ+ P++ + + IG TGS
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGS 170
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 313 PYEVEEYRNKHEVTVS 360
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -1
Query: 88 IIPVTR-HDYFSDLVEDVYLNYGFFLTQ 8
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 442 PLSLHLVAHNQENL--LLQSIE 383
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit
Med31|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 25.0 bits (52), Expect = 8.4
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -1
Query: 484 RASLELEWASVLCNPLSLHLVAHN---QENLLLQSIE*DYEPQRHLQLPRVYFYTLRLHM 314
R +ELE+ +L NP L+ +A + ++ LQ +E E R + + Y LHM
Sbjct: 16 RFEIELEFVQMLSNPWYLNFLAQHKYFEDEAFLQYLE-YMEYWREPEYVKFIIYPTCLHM 74
Query: 313 V 311
+
Sbjct: 75 L 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,412
Number of Sequences: 5004
Number of extensions: 49740
Number of successful extensions: 162
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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