Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0347.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 107 5e-24
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524... 93 1e-19
03_02_0758 + 10954268-10954841,10955988-10957145,10957176-109572... 75 6e-14
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 66 2e-11
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 64 6e-11
08_01_0397 - 3509186-3510291,3510322-3512335 62 3e-10
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 61 6e-10
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310... 60 2e-09
02_01_0381 - 2764331-2764342,2768966-2769907 51 8e-07
06_03_1255 + 28780181-28781172,28782065-28782932 48 4e-06
02_01_0765 - 5694535-5694644,5695039-5696550,5697229-5697390,569... 45 5e-05
03_05_0865 - 28365430-28367640 44 7e-05
06_03_0674 + 23422004-23422552,23423295-23423369,23424360-234244... 44 9e-05
03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009... 43 2e-04
07_03_1500 + 27001842-27002058,27002144-27002283,27002458-270025... 41 9e-04
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 40 0.002
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973... 38 0.006
07_02_0023 - 11918735-11918827,11919139-11919231,11919320-119194... 38 0.006
03_05_0619 - 26180980-26181105,26181329-26181417,26181518-261816... 37 0.011
04_04_0476 - 25508952-25509004,25509245-25509326,25509453-255096... 34 0.075
08_02_0671 - 19890187-19890295,19891186-19891320,19891551-198919... 34 0.099
07_03_1566 + 27766336-27766393,27766480-27766609,27766728-277667... 33 0.17
12_02_0340 - 17725866-17725884,17726046-17726326,17726842-177269... 31 0.53
07_03_0601 - 19872780-19873099,19873148-19873151,19874196-198743... 30 1.2
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 29 2.1
01_07_0333 - 42813789-42814073,42814229-42814315,42815083-428151... 29 3.7
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093 28 4.9
09_04_0640 - 19166953-19167285,19167631-19168449,19169057-191691... 27 8.6
03_06_0344 - 33276366-33276548,33277044-33277169,33277254-332773... 27 8.6
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 107 bits (258), Expect = 5e-24
Identities = 47/99 (47%), Positives = 64/99 (64%)
Frame = +1
Query: 235 PRLGFCLLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 414
P+ F L PF KNFY P V S +V +YR + ++TV G +V P++YF+EANFPD
Sbjct: 106 PKPDFRSLIPFEKNFYVECPAVQAMSDMDVSQYRRQRDITVEGHDVPKPVRYFQEANFPD 165
Query: 415 YVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
Y Q + G+ EPTPIQ+QGWP + ++ IG+ QTGS
Sbjct: 166 YCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGS 204
>01_01_0682 -
5244805-5244919,5246468-5246613,5246813-5246994,
5247069-5247295,5247382-5247467,5247564-5247656,
5247964-5248118,5248407-5248490,5248589-5248768,
5249587-5249828,5249927-5249982
Length = 521
Score = 93.5 bits (222), Expect = 1e-19
Identities = 41/92 (44%), Positives = 58/92 (63%)
Frame = +1
Query: 256 LQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 435
L F KNFY P+V + EVE YR + E+TV G +V P++ F + FP+YV Q +
Sbjct: 48 LPRFEKNFYVESPSVAGMTEEEVEAYRRRREITVEGRDVPKPVREFRDVGFPEYVLQEIT 107
Query: 436 TMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
G+ EPTPIQ+QGWP + ++ IG+ +TGS
Sbjct: 108 KAGFVEPTPIQSQGWPMALRGRDLIGIAETGS 139
>03_02_0758 +
10954268-10954841,10955988-10957145,10957176-10957216,
10957412-10957448,10957534-10957954,10958201-10958234
Length = 754
Score = 74.5 bits (175), Expect = 6e-14
Identities = 34/91 (37%), Positives = 51/91 (56%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
+PFNK+FY+ P+V S EV +Y + VSG +V PI+ F + FP + +
Sbjct: 177 EPFNKDFYEEKPSVSGMSEQEVADYMKSLAIRVSGFDVPRPIKSFADCGFPVQLMNAIAK 236
Query: 439 MGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
GY++PT IQ Q P ++ IG+ +TGS
Sbjct: 237 QGYEKPTTIQCQALPIVLSGRDIIGIAKTGS 267
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 66.5 bits (155), Expect = 2e-11
Identities = 28/69 (40%), Positives = 42/69 (60%)
Frame = +1
Query: 325 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKE 504
E YR++HE+TV G V PI FE FP + + ++ G+ PTPIQAQ WP + ++
Sbjct: 130 EAYRHRHEITVVGDNVPAPITSFETGGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQD 189
Query: 505 FIGVXQTGS 531
+ + +TGS
Sbjct: 190 VVAIAKTGS 198
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 64.5 bits (150), Expect = 6e-11
Identities = 28/69 (40%), Positives = 40/69 (57%)
Frame = +1
Query: 325 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKE 504
E YR KHE+T+ G E P F+ FP + + V+ G+ PTPIQAQ WP + ++
Sbjct: 160 EAYRAKHEITIVGNEAPAPFMTFQSTGFPPEILREVQQAGFSAPTPIQAQSWPIALRNRD 219
Query: 505 FIGVXQTGS 531
+ V +TGS
Sbjct: 220 IVAVAKTGS 228
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 62.1 bits (144), Expect = 3e-10
Identities = 31/91 (34%), Positives = 50/91 (54%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
QPF KNFY + K + EV YR + E+ V G +V PI+ + ++ + +K
Sbjct: 382 QPFRKNFYIEVKDITKMAAEEVAAYRKQLELKVHGKDVPKPIKTWVQSGLTSKLLDTIKK 441
Query: 439 MGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
+G+++P IQAQ P ++ IG+ +TGS
Sbjct: 442 LGFEKPMSIQAQALPIIMSGRDCIGIAKTGS 472
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 61.3 bits (142), Expect = 6e-10
Identities = 27/69 (39%), Positives = 37/69 (53%)
Frame = +1
Query: 325 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKE 504
+ YR HEVT G V P FE FP + Q + G+ PTPIQAQ WP + ++
Sbjct: 584 DAYRQHHEVTAVGENVPPPFMTFEATGFPPEILQEIHAAGFLNPTPIQAQTWPVALQNRD 643
Query: 505 FIGVXQTGS 531
+ + +TGS
Sbjct: 644 IVAIAKTGS 652
>08_01_0353 -
3107628-3107774,3108177-3108213,3108248-3109164,
3109210-3110952
Length = 947
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/91 (32%), Positives = 48/91 (52%)
Frame = +1
Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
QPF KN Y + + EV YR E+ V G +V PI+ + ++ + +K
Sbjct: 243 QPFRKNLYIEVKDITMMTGEEVATYRKNLELKVHGKDVPKPIKTWVQSGLTSKLLDTIKK 302
Query: 439 MGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
+G+++P PIQAQ P ++ IG+ +TGS
Sbjct: 303 LGFEKPMPIQAQALPIIMSGRDCIGIAKTGS 333
>02_01_0381 - 2764331-2764342,2768966-2769907
Length = 317
Score = 50.8 bits (116), Expect = 8e-07
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +1
Query: 292 PTVLKRSPY-EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 468
P L+R P + +E R K + V G +V P + F + P+ + + ++ G +PTPIQ
Sbjct: 150 PLRLRRMPRAKADELRRKWHILVDGDDVPPPARDFRDLRLPEPMLRKLREKGIVQPTPIQ 209
Query: 469 AQGWPDSYVWKEFIGVXQTGS 531
QG P ++ IG+ TGS
Sbjct: 210 VQGLPVVLSGRDMIGIAFTGS 230
>06_03_1255 + 28780181-28781172,28782065-28782932
Length = 619
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +1
Query: 292 PTVLKRSPYE-VEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 468
P L+R P + R + V G +V P + F + P+ + + ++ G ++PTPIQ
Sbjct: 141 PLRLRRMPRSRADALRRSWHILVDGDDVPPPSRSFGDLRLPEPILRALRGKGIEKPTPIQ 200
Query: 469 AQGWPDSYVWKEFIGVXQTGS 531
QG P + ++ IG+ TGS
Sbjct: 201 VQGLPVALSGRDMIGIAFTGS 221
>02_01_0765 -
5694535-5694644,5695039-5696550,5697229-5697390,
5698015-5698057
Length = 608
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = +1
Query: 319 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVW 498
++ R+K ++ V G +V +PI F + P+ + ++ GY PTP+Q Q P S
Sbjct: 160 QIASLRSKLDICVKGEDVPDPIMCFSSSGLPEKLVLNLEAAGYVMPTPVQMQVIPSSICN 219
Query: 499 KEFIGVXQTGS 531
+ + TGS
Sbjct: 220 RSLLVSADTGS 230
>03_05_0865 - 28365430-28367640
Length = 736
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/67 (29%), Positives = 36/67 (53%)
Frame = +1
Query: 331 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFI 510
+R ++ G +V P++ + E+ + + V+ GYKEP+PIQ P ++ I
Sbjct: 297 FREDFNISYKGSKVPRPMRKWSESKLGTELLRAVEKAGYKEPSPIQMASIPLGLQQRDVI 356
Query: 511 GVXQTGS 531
G+ +TGS
Sbjct: 357 GIAETGS 363
>06_03_0674 +
23422004-23422552,23423295-23423369,23424360-23424443,
23424749-23424991,23425348-23425515,23425608-23425727,
23426372-23427016
Length = 627
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +1
Query: 349 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTG 528
V VSG +V P FE A + V + V GY+ PTP+Q P + ++ + QTG
Sbjct: 72 VEVSGEDVPPPADGFEAAGLVEAVLRNVARCGYESPTPVQRYSMPIALAGRDLMACAQTG 131
Query: 529 S 531
S
Sbjct: 132 S 132
>03_06_0365 -
33399422-33399925,33400470-33400583,33400762-33400929,
33401305-33401547,33402148-33402231,33402323-33403098,
33404423-33404636
Length = 700
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +1
Query: 349 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTG 528
V SG +V P+ F E + D + + ++ Y +PTP+Q P S ++ + QTG
Sbjct: 225 VETSGHDVPPPVNTFAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTG 284
Query: 529 SRQKR---WPTSCQXLSHK*PXRP 591
S + +P +S + P RP
Sbjct: 285 SGKTAAFCFPIISGIMSSRPPQRP 308
>07_03_1500 +
27001842-27002058,27002144-27002283,27002458-27002549,
27002680-27002776,27002871-27002951,27003031-27003263,
27003876-27004070,27004149-27004239,27004324-27004446,
27004542-27004692,27005060-27005262
Length = 540
Score = 40.7 bits (91), Expect = 9e-04
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +1
Query: 334 RNKHEVTVSGVEVHNPIQYFEEA----NFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWK 501
R K ++ +SG V P++ FEE Y+ + +G++EPTPIQ Q P +
Sbjct: 125 RKKFDIHISGQNVPAPLENFEELVSRYGCDSYLVGNLSKLGFQEPTPIQRQAIPILLSGR 184
Query: 502 EFIGVXQTGS 531
E TGS
Sbjct: 185 ECFACAPTGS 194
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1
Query: 349 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTG 528
V SG +V P F E + D + + ++ Y +PTP+Q P S ++ + QTG
Sbjct: 311 VETSGHDVPPPANTFAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTG 370
Query: 529 S 531
S
Sbjct: 371 S 371
>11_06_0300 +
22095396-22096145,22096261-22096344,22097062-22097304,
22098535-22098702,22098895-22099008,22099378-22099890
Length = 623
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +1
Query: 349 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTG 528
V SG EV P+ F E + + ++ Y PTP+Q P S ++ + QTG
Sbjct: 143 VETSGREVPPPVGTFAEIDLGQALNDNIRRCKYVRPTPVQRYAIPISLAGRDLMACAQTG 202
Query: 529 S 531
S
Sbjct: 203 S 203
>07_02_0023 -
11918735-11918827,11919139-11919231,11919320-11919484,
11920234-11920327,11921012-11921136,11921228-11921313,
11921786-11921864,11923777-11923857,11924153-11924260,
11924870-11924994,11925110-11925530
Length = 489
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +1
Query: 379 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
P+ F P V K G++ P+PIQA WP ++FIG+ TGS
Sbjct: 92 PLSSFAATALPPQVLDCCK--GFERPSPIQAYAWPYLLDGRDFIGIAATGS 140
>03_05_0619 -
26180980-26181105,26181329-26181417,26181518-26181629,
26181711-26181848,26182004-26182150,26182458-26182532,
26182627-26182668,26183033-26183152,26183806-26183880,
26184051-26184113,26184690-26184759,26184877-26185006,
26185097-26185328
Length = 472
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +1
Query: 379 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
P + E P+ V MG+KEPT IQA+ P + ++ IG+ QTGS
Sbjct: 40 PSTFAELGVVPELVA-ACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGS 89
>04_04_0476 -
25508952-25509004,25509245-25509326,25509453-25509611,
25509702-25509767,25509898-25510067,25510172-25510262,
25510331-25510410,25510887-25511003,25511092-25511218,
25511685-25511865,25511978-25512366,25512959-25513135,
25513306-25513500,25513844-25514031,25514192-25514500,
25514592-25514637
Length = 809
Score = 34.3 bits (75), Expect = 0.075
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +1
Query: 430 VKTMGYKEPTPIQAQGWP-DSYVWKEFIGVXQTGS 531
V+ +G+KEPTPIQ +P ++ K+ IG +TGS
Sbjct: 157 VRRLGFKEPTPIQKACFPAAAHQGKDVIGAAETGS 191
>08_02_0671 -
19890187-19890295,19891186-19891320,19891551-19891917,
19892909-19893044,19894924-19894974,19895053-19895134,
19895801-19895853,19895989-19896065,19896234-19896273,
19897666-19897767,19897989-19898031,19898127-19899288,
19899902-19900271
Length = 908
Score = 33.9 bits (74), Expect = 0.099
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
FE + V +GV+ GY+ PTPIQ + P + + +TGS
Sbjct: 28 FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGS 74
>07_03_1566 +
27766336-27766393,27766480-27766609,27766728-27766797,
27767134-27767196,27767741-27767815,27768035-27768154,
27768508-27768549,27768651-27768725,27768909-27769055,
27769165-27769302,27769448-27769562,27769658-27769746,
27770062-27770184
Length = 414
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 439 MGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
MG+K PT IQA+ P + ++ IGV QTGS
Sbjct: 1 MGWKAPTRIQAEVIPFALQGRDVIGVGQTGS 31
>12_02_0340 -
17725866-17725884,17726046-17726326,17726842-17726928,
17727018-17727113,17728484-17728585,17728720-17728762,
17728834-17728952,17729348-17729444,17730153-17730214,
17730370-17730432,17730847-17730949,17731402-17731497,
17731594-17731742,17732356-17732529,17733078-17733156,
17733807-17733913,17733994-17734062,17734879-17735043,
17735206-17735703
Length = 802
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
F E N + + + +GY++PTPIQA P + ++ G TGS
Sbjct: 196 FLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGS 242
>07_03_0601 -
19872780-19873099,19873148-19873151,19874196-19874357,
19874429-19874617,19874687-19875010,19875103-19875378,
19875436-19875478,19876110-19876188,19876473-19876555,
19876708-19876782,19877324-19877490,19877960-19878370
Length = 710
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
F+E + + G++ GY E + IQ P + ++ +G +TGS
Sbjct: 82 FDELPLSNKTKDGLRKAGYTEMSEIQRAALPHALCGRDVLGAAKTGS 128
>08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 227 MRRPDWDSVYSNLSTKTFMIHILQFSKDHH 316
MR PD D S K F IH+ S DHH
Sbjct: 1226 MRSPDDDKPTSWSDQKVFEIHVYPSSNDHH 1255
>01_07_0333 -
42813789-42814073,42814229-42814315,42815083-42815172,
42815555-42815623,42815859-42815888,42816060-42816164,
42816454-42816549,42816647-42816760,42816862-42816955,
42817027-42817190
Length = 377
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 409 PDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
P++V Q + +GY PT +Q Q P ++ I QTGS
Sbjct: 49 PEHVLQRAEEVGYVVPTEVQEQSLPVLLSGQDCILHAQTGS 89
>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
Length = 1040
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 310 SPYEVEEYRNKHEVTVSGVEVHN 378
SP +EE N E+ V GV++HN
Sbjct: 431 SPQMIEEMNNVRELNVKGVKLHN 453
>09_04_0640 -
19166953-19167285,19167631-19168449,19169057-19169163,
19170070-19170154
Length = 447
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 108 PNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEG---RTCDAQIGILFTPTFQQ 272
P +E + ++ RL L+ V I +DL L+ +LEG R CD + + T QQ
Sbjct: 203 PTIEPGSWRSLKRLCLSFVRITEDDLGCLLLNSLALEGMELRHCDEIVSLKIPCTLQQ 260
>03_06_0344 -
33276366-33276548,33277044-33277169,33277254-33277322,
33277401-33277505,33277595-33277633,33277717-33278016,
33278093-33278182,33278271-33278312,33278433-33278516,
33278762-33278947,33279218-33279403,33279663-33280025
Length = 590
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 391 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
F E + + ++ M Y T IQA+ P K+ +G +TGS
Sbjct: 98 FSELGVSEPTARAIREMNYTYLTQIQARSIPHLLNGKDVMGAAKTGS 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,532,313
Number of Sequences: 37544
Number of extensions: 290125
Number of successful extensions: 791
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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