Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0347.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   1e-13
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)                  60   1e-09
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)                  55   5e-08
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)               54   7e-08
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)                  53   2e-07
SB_43842| Best HMM Match : RNB (HMM E-Value=0)                         50   1e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)            47   1e-05
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   5e-04
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)                42   5e-04
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.019
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  30   1.2  
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)              30   1.6  
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)                         29   2.9  
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)                  28   6.6  
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   27   8.7  

>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 32/91 (35%), Positives = 51/91 (56%)
 Frame = +1

Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 438
           +PFNKNFY+ HP + K+S  E+++ R K  + VSG     P   F    F + +   ++ 
Sbjct: 475 KPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDEQMMASIRK 534

Query: 439 MGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
           + Y +PT IQ Q  P +   ++ IG+ +TGS
Sbjct: 535 LEYTQPTQIQCQALPIALSGRDIIGIAKTGS 565


>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
          Length = 690

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 27/56 (48%), Positives = 36/56 (64%)
 Frame = +1

Query: 307 RSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 474
           R  +EV+ YR   ++TV+G  V  P+  FEE+ FPDY+Q   K  G+ EPT IQAQ
Sbjct: 57  RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112


>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
          Length = 428

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 25/67 (37%), Positives = 39/67 (58%)
 Frame = +1

Query: 331 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFI 510
           +R    ++  G  +  PI+ ++EA  PD + + V  +GYK+PTPIQ Q  P     ++ I
Sbjct: 83  FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142

Query: 511 GVXQTGS 531
           GV +TGS
Sbjct: 143 GVAETGS 149


>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
 Frame = +1

Query: 259 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVK 435
           QPF K+FY   P + K +P E +E+R   E + V G     P++ + +      +   +K
Sbjct: 62  QPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILDVLK 121

Query: 436 TMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGSRQ 537
              Y++PTPIQAQ  P     ++ I +  T +R+
Sbjct: 122 KNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRE 155


>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
          Length = 500

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 26/84 (30%), Positives = 43/84 (51%)
 Frame = +1

Query: 280 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 459
           Y  HPT+   +  +V++ R+K E+ V G  V +P+  F   +F + + + +   GY  PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220

Query: 460 PIQAQGWPDSYVWKEFIGVXQTGS 531
           PIQ Q  P     ++ +    TGS
Sbjct: 221 PIQMQVLPVLLSGRDVMVCASTGS 244


>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
          Length = 1238

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 26/89 (29%), Positives = 45/89 (50%)
 Frame = +1

Query: 265 FNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 444
           F  ++YD +  V + S   V+E R K+ + + G +   PI+ F + N P  +   +    
Sbjct: 32  FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91

Query: 445 YKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
           ++ PTPIQ Q        ++ IG+ +TGS
Sbjct: 92  FQVPTPIQMQSLSCVMSGRDIIGLAETGS 120


>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
          Length = 1058

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
 Frame = +1

Query: 319 EVEEYRNKHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWP 483
           ++  +R++  + V G +V +P++ F    E   FPDY+   V+  GY  PTPIQ Q  P
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATP 195


>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 25/69 (36%), Positives = 35/69 (50%)
 Frame = +1

Query: 325 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKE 504
           E+Y ++ EV VSG      I  FEEAN  +     V+   YK+PTP+Q    P     ++
Sbjct: 692 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 750

Query: 505 FIGVXQTGS 531
            +   QTGS
Sbjct: 751 VMACAQTGS 759


>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
          Length = 185

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 25/69 (36%), Positives = 35/69 (50%)
 Frame = +1

Query: 325 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKE 504
           E+Y ++ EV VSG      I  FEEAN  +     V+   YK+PTP+Q    P     ++
Sbjct: 115 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 173

Query: 505 FIGVXQTGS 531
            +   QTGS
Sbjct: 174 VMACAQTGS 182


>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +1

Query: 355 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
           VSG      I  F E  F + +   +   GY+ PTP+Q    P     ++ +   QTGS
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGS 527


>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 382  IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKEFIGVXQTGS 531
            I  FE+ +  + +   V   GYK+PTP+Q    P     ++ +   QTGS
Sbjct: 874  ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGS 923


>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 480

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 367 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 480
           ++H P++   +  FP Y +       Y  P P QA  W
Sbjct: 6   DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +1

Query: 313 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 444
           P+E  + + KH++ V+ VE +  +Q +E   F + ++Q VK  G
Sbjct: 252 PFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQ-VKDTG 294


>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
          Length = 490

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +1

Query: 340 KHEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 483
           KHEV V   +  +P+   + FEE      +++GV  MG+ +P+ IQ    P
Sbjct: 85  KHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALP 135


>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 697

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 409 PDYVQQGVKTMGYKEPTPIQAQGWPDSYVW-KEFIGVXQTGS 531
           PD + + +   G+ +PTPIQ+   P + ++ ++ IG  +TGS
Sbjct: 139 PD-ILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGS 179


>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 734

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 197 HQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGY 87
           H     L  YC RC T       CCLLQ++++ ++G+
Sbjct: 484 HLQQPSLAAYC-RCITILTTAIACCLLQVYHNTYNGH 519


>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
          Length = 675

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 325 EEYRNK-HEVTVSGVEVHNPIQYFEEANFPDY 417
           EE  NK H++ +  + +HNP  YFE+ +  DY
Sbjct: 234 EEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264


>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 29

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -1

Query: 262 VGVNRIPIWASHVLPSREF 206
           VGV  I  WAS++LPSR+F
Sbjct: 10  VGVRDIEQWASNLLPSRQF 28


>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
          Length = 401

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 221 ALQRILFSHQSLQILQIYCHRCQTETNYRRICCLLQIWN-HRFHGYYSS 78
           AL+RI     + ++       C    +YRR CC L +W  H  + Y+SS
Sbjct: 197 ALERIATPVTTSKLRCSTTQECCVRVDYRRKCC-LHVWRVHTTNTYWSS 244


>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 221  QNMRRPDWDSVYSNLSTKTFMIHILQFSKDHHMKSKSIEI 340
            +NM +P W      +S   F+ ++L F KD  +  +++E+
Sbjct: 3073 RNMLKPSWSESLKLMSKSDFLNNLLNFDKD-SINDETVEL 3111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,086,748
Number of Sequences: 59808
Number of extensions: 348132
Number of successful extensions: 945
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)